Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g03934 | ATGGCTTGGTGGTCTGATTCAACTACTCAGAACAAACAATCTCGTCCCTCTCAACCTCTTTACGTTCCTCAATTCCgttccaacaacaacaacaacattcatcaacaacaacctcCTTACAACAACAATAATCGAACCCATTTTCCTTCATCTGACGATTCACCTCACTTAACTTTCAATCGTTCAACTCCCCGACCACGTGGTCGAGGCGGTTACGGTTTCGGTCCGCCAcgtcatcaacaacaacaaccacggAACTATGATCCTTCTTATCGGAACAACCGCTCACCGTTTGAAACTAACGCCGAACCTGTAAACAATGAAAACGGTTCAAACGGCGTCATTGCGAATTTCGAAGCGTATGATTCAATCCCTGTTGAAGCGACCGGAGAGAATGTTCCTCCTCCGGTCAATGTGTTCGCTGAAACGGAACTTCATGATGATTTGAAGAACAACATTGAACGATGTAAGTATGTCAAACCTACTCCTGTTCAACGTCACGCGATCCCCATTGCCGTTGCTGGTAGAGACCTTATGGCTTGTGCTCAAACTGGTTCTGGTAAAACGGCGGCGTTTTGTTTTCCGATTATATCTGGGATCATGAAAGAACGTTTAACTTCTCAGTTTTCTGATATGCCACGTGGCGGTGGTTCCGATGTTGCTTTTCCCACTGCACTCATCTTGTCTCCAACTAGGGAGTTATCATGccagATACATGCTGAAGCGACAAAGTTTGCATATCAAACAGGAGTGAAGATTGCGGTTTGTTATGGTGGTGCTCCTGTTGGTCAGCAGTTAAGGATTTTGGAACGAGGTGTTGATATTTTGGTTGCTACTCCTGGTCGTTTGGTTGATTTGATTGAGAGAGAAAGGATTTCTTTGAAGAAGATTAAGTATCTTGCTTTGGATGAGGCTGATCGGATGCTTGACATGGGTTTTGAGCATCAGATTCGAAATATTGTTCAGCAGATGAATATGCCTCCGCCGGGTGATAGACAAACATTGCTTTTCAGTGCTACATTTCCTGATAATATACAGAAGCTTGCATCTGATTTTTTATCGAACTATGTGTTCCTTGCTGTTGGAAGGGTTGGTTCAAGTACTGAACTGATTGTACAGAAAGTTGAATCTGTACAGGATACGGAGAAAAGAAATCGTCTTGTCGATCTTCTCCGACACAATGTAGTTAATGGGAAGCTTGCTTTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAAAACTGGTTGTGCAGAAGTGGTTTTCCAGCTATTGCAATACATGGTGATAAGGTTCAAATGGAGAGGGAACGAGCTTTGAGATCTTTCAAACGTGGTATGACTCCAATAATGGTTGCGACTGATGTTGCTTCTCGAGGATTGGATATCCCTCACGTGGCTCATGTTATTAACTTTGACTTGCCTAGGGACATAGATGACTATGTACATAGAATTGGTAGAACAGGCCGTGCTGGTCAAACTGGCTTAGCAACAGCTTTCTTCAGCAGCAAGAACATGCCTATTGCAAAGTCTCTTGTTGGTCTTTTACAGGAAGCAAAACAAGAAGTTCCTTCTTGGCTTGTCCAATGTTCTGAGAGTTCACCACCAAGTGGACGTAGCAGCTTTGGATCTCAACGGTCGCCCTGGAGAGGCAATTATGGAGGGCGTGATTTCCGGACTGCAAATGAACCTGGGATGGTGGAGAACTACAACAACTACAACAGCAGTTACAACAATTATGGTGATAATGGTTTTCATAATGTTCCTGAACAGGTGGAGAATTACAACAACAACGGTACCTACAGCAATGGAGACCATGCTGCTAACACTTATACTGATACCTCTATAGACATCCAAAACTCTAACAACAACTGCTCTTTTGACAGCACTAATACAGGGTTTGCTGGTGGTTACAATTGCACTGATGCTGGTTTATTAGAAGGTAGTGATGGTCAAAATGGACCATGTGGTTATGCATCTGTTGTGCCCACTGGATGGGACTAA | 2013 | 0.4188 | MAWWSDSTTQNKQSRPSQPLYVPQFRSNNNNNIHQQQPPYNNNNRTHFPSSDDSPHLTFNRSTPRPRGRGGYGFGPPRHQQQQPRNYDPSYRNNRSPFETNAEPVNNENGSNGVIANFEAYDSIPVEATGENVPPPVNVFAETELHDDLKNNIERCKYVKPTPVQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKERLTSQFSDMPRGGGSDVAFPTALILSPTRELSCQIHAEATKFAYQTGVKIAVCYGGAPVGQQLRILERGVDILVATPGRLVDLIERERISLKKIKYLALDEADRMLDMGFEHQIRNIVQQMNMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKVESVQDTEKRNRLVDLLRHNVVNGKLALTLVFVETKKGADALENWLCRSGFPAIAIHGDKVQMERERALRSFKRGMTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQTGLATAFFSSKNMPIAKSLVGLLQEAKQEVPSWLVQCSESSPPSGRSSFGSQRSPWRGNYGGRDFRTANEPGMVENYNNYNSSYNNYGDNGFHNVPEQVENYNNNGTYSNGDHAANTYTDTSIDIQNSNNNCSFDSTNTGFAGGYNCTDAGLLEGSDGQNGPCGYASVVPTGWD | 670 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g03934 | 670 | MobiDBLite | consensus disorder prediction | 1 | 111 | - | - | |
Tsu04g03934 | 670 | Pfam | Helicase conserved C-terminal domain | 383 | 495 | IPR001650 | - | |
Tsu04g03934 | 670 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 | 52 | 575 | - | - | |
Tsu04g03934 | 670 | Gene3D | - | 361 | 536 | IPR027417 | - | |
Tsu04g03934 | 670 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 52 | 575 | - | - | |
Tsu04g03934 | 670 | MobiDBLite | consensus disorder prediction | 534 | 551 | - | - | |
Tsu04g03934 | 670 | Pfam | DEAD/DEAH box helicase | 162 | 348 | IPR011545 | GO:0003676|GO:0005524 | |
Tsu04g03934 | 670 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 224 | 510 | IPR027417 | - | |
Tsu04g03934 | 670 | MobiDBLite | consensus disorder prediction | 534 | 556 | - | - | |
Tsu04g03934 | 670 | CDD | SF2_C_DEAD | 371 | 504 | - | - | |
Tsu04g03934 | 670 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 138 | 166 | IPR014014 | GO:0003724 | |
Tsu04g03934 | 670 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 394 | 534 | IPR001650 | - | |
Tsu04g03934 | 670 | SMART | helicmild6 | 414 | 495 | IPR001650 | - | |
Tsu04g03934 | 670 | CDD | DEADc_DDX3_DDX4 | 140 | 365 | IPR044763 | GO:0003724|GO:0005524 | |
Tsu04g03934 | 670 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 169 | 359 | IPR014001 | - | |
Tsu04g03934 | 670 | MobiDBLite | consensus disorder prediction | 79 | 111 | - | - | |
Tsu04g03934 | 670 | SMART | ultradead3 | 157 | 374 | IPR014001 | - | |
Tsu04g03934 | 670 | Gene3D | - | 95 | 360 | IPR027417 | - | |
Tsu04g03934 | 670 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g03934 | Tsu-Chr4 | 48117020 | 48120426 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g03934 | 136 | 515 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.637 | 1.51e-60 | 206 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g03934 | K11594 | - | gmx:100791226 | 745.347 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu04g03934 | 04 | 48117020 | 48120426 | Tsu04g03934 | 04 | 48117020 | 48120426 | ECH |