Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03934 ATGGCTTGGTGGTCTGATTCAACTACTCAGAACAAACAATCTCGTCCCTCTCAACCTCTTTACGTTCCTCAATTCCgttccaacaacaacaacaacattcatcaacaacaacctcCTTACAACAACAATAATCGAACCCATTTTCCTTCATCTGACGATTCACCTCACTTAACTTTCAATCGTTCAACTCCCCGACCACGTGGTCGAGGCGGTTACGGTTTCGGTCCGCCAcgtcatcaacaacaacaaccacggAACTATGATCCTTCTTATCGGAACAACCGCTCACCGTTTGAAACTAACGCCGAACCTGTAAACAATGAAAACGGTTCAAACGGCGTCATTGCGAATTTCGAAGCGTATGATTCAATCCCTGTTGAAGCGACCGGAGAGAATGTTCCTCCTCCGGTCAATGTGTTCGCTGAAACGGAACTTCATGATGATTTGAAGAACAACATTGAACGATGTAAGTATGTCAAACCTACTCCTGTTCAACGTCACGCGATCCCCATTGCCGTTGCTGGTAGAGACCTTATGGCTTGTGCTCAAACTGGTTCTGGTAAAACGGCGGCGTTTTGTTTTCCGATTATATCTGGGATCATGAAAGAACGTTTAACTTCTCAGTTTTCTGATATGCCACGTGGCGGTGGTTCCGATGTTGCTTTTCCCACTGCACTCATCTTGTCTCCAACTAGGGAGTTATCATGccagATACATGCTGAAGCGACAAAGTTTGCATATCAAACAGGAGTGAAGATTGCGGTTTGTTATGGTGGTGCTCCTGTTGGTCAGCAGTTAAGGATTTTGGAACGAGGTGTTGATATTTTGGTTGCTACTCCTGGTCGTTTGGTTGATTTGATTGAGAGAGAAAGGATTTCTTTGAAGAAGATTAAGTATCTTGCTTTGGATGAGGCTGATCGGATGCTTGACATGGGTTTTGAGCATCAGATTCGAAATATTGTTCAGCAGATGAATATGCCTCCGCCGGGTGATAGACAAACATTGCTTTTCAGTGCTACATTTCCTGATAATATACAGAAGCTTGCATCTGATTTTTTATCGAACTATGTGTTCCTTGCTGTTGGAAGGGTTGGTTCAAGTACTGAACTGATTGTACAGAAAGTTGAATCTGTACAGGATACGGAGAAAAGAAATCGTCTTGTCGATCTTCTCCGACACAATGTAGTTAATGGGAAGCTTGCTTTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAAAACTGGTTGTGCAGAAGTGGTTTTCCAGCTATTGCAATACATGGTGATAAGGTTCAAATGGAGAGGGAACGAGCTTTGAGATCTTTCAAACGTGGTATGACTCCAATAATGGTTGCGACTGATGTTGCTTCTCGAGGATTGGATATCCCTCACGTGGCTCATGTTATTAACTTTGACTTGCCTAGGGACATAGATGACTATGTACATAGAATTGGTAGAACAGGCCGTGCTGGTCAAACTGGCTTAGCAACAGCTTTCTTCAGCAGCAAGAACATGCCTATTGCAAAGTCTCTTGTTGGTCTTTTACAGGAAGCAAAACAAGAAGTTCCTTCTTGGCTTGTCCAATGTTCTGAGAGTTCACCACCAAGTGGACGTAGCAGCTTTGGATCTCAACGGTCGCCCTGGAGAGGCAATTATGGAGGGCGTGATTTCCGGACTGCAAATGAACCTGGGATGGTGGAGAACTACAACAACTACAACAGCAGTTACAACAATTATGGTGATAATGGTTTTCATAATGTTCCTGAACAGGTGGAGAATTACAACAACAACGGTACCTACAGCAATGGAGACCATGCTGCTAACACTTATACTGATACCTCTATAGACATCCAAAACTCTAACAACAACTGCTCTTTTGACAGCACTAATACAGGGTTTGCTGGTGGTTACAATTGCACTGATGCTGGTTTATTAGAAGGTAGTGATGGTCAAAATGGACCATGTGGTTATGCATCTGTTGTGCCCACTGGATGGGACTAA 2013 0.4188 MAWWSDSTTQNKQSRPSQPLYVPQFRSNNNNNIHQQQPPYNNNNRTHFPSSDDSPHLTFNRSTPRPRGRGGYGFGPPRHQQQQPRNYDPSYRNNRSPFETNAEPVNNENGSNGVIANFEAYDSIPVEATGENVPPPVNVFAETELHDDLKNNIERCKYVKPTPVQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKERLTSQFSDMPRGGGSDVAFPTALILSPTRELSCQIHAEATKFAYQTGVKIAVCYGGAPVGQQLRILERGVDILVATPGRLVDLIERERISLKKIKYLALDEADRMLDMGFEHQIRNIVQQMNMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKVESVQDTEKRNRLVDLLRHNVVNGKLALTLVFVETKKGADALENWLCRSGFPAIAIHGDKVQMERERALRSFKRGMTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQTGLATAFFSSKNMPIAKSLVGLLQEAKQEVPSWLVQCSESSPPSGRSSFGSQRSPWRGNYGGRDFRTANEPGMVENYNNYNSSYNNYGDNGFHNVPEQVENYNNNGTYSNGDHAANTYTDTSIDIQNSNNNCSFDSTNTGFAGGYNCTDAGLLEGSDGQNGPCGYASVVPTGWD 670
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03934 670 MobiDBLite consensus disorder prediction 1 111 - -
Tsu04g03934 670 Pfam Helicase conserved C-terminal domain 383 495 IPR001650 -
Tsu04g03934 670 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 52 575 - -
Tsu04g03934 670 Gene3D - 361 536 IPR027417 -
Tsu04g03934 670 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 575 - -
Tsu04g03934 670 MobiDBLite consensus disorder prediction 534 551 - -
Tsu04g03934 670 Pfam DEAD/DEAH box helicase 162 348 IPR011545 GO:0003676|GO:0005524
Tsu04g03934 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 510 IPR027417 -
Tsu04g03934 670 MobiDBLite consensus disorder prediction 534 556 - -
Tsu04g03934 670 CDD SF2_C_DEAD 371 504 - -
Tsu04g03934 670 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Tsu04g03934 670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 534 IPR001650 -
Tsu04g03934 670 SMART helicmild6 414 495 IPR001650 -
Tsu04g03934 670 CDD DEADc_DDX3_DDX4 140 365 IPR044763 GO:0003724|GO:0005524
Tsu04g03934 670 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 359 IPR014001 -
Tsu04g03934 670 MobiDBLite consensus disorder prediction 79 111 - -
Tsu04g03934 670 SMART ultradead3 157 374 IPR014001 -
Tsu04g03934 670 Gene3D - 95 360 IPR027417 -
Tsu04g03934 670 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g03934 Tsu-Chr4 48117020 48120426 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03934 136 515 Eukaryotic Initiation Factors Gene Family AT3G19760 32.637 1.51e-60 206
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03934 K11594 - gmx:100791226 745.347
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03934 04 48117020 48120426 Tsu04g03934 04 48117020 48120426 ECH