Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03927 ATGGATGAAGATTTGTTGAAGCGTAACACCGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGCAGAGTGTGAGTATAGGCACCATGAGATTGCAAGGCTTAACCCGAGGGATTGTTGGTACTGGTTATCGGGGAATTGTCTTAATCCCACTTGTGCTTTTCGACACCCTCCATTGGATGGGCACACTGGAGTGCCATCTGAACCTGCGCCATCTTCGTTACCTGCAACTGCAAATAAGACAATGGTTCCCTGTTATTTCTACTTCAATGGGTTTTGCAACAAAGGTAACAGATGCTCATTTTTGCACGGGACTGATGCTAGCTTGCTCGCTGTAAAGCCTTTGAAGAATGACAATGTAAAGCCTCTGAAGAATGACAATGGAAACATTAATGCACTCAACAACTTAGAAAACAAAACTTCACCAGGAAATAAAACAGTTGCATCAAAACCAAGTGAAACACATGTTGACCAACCTTTATCTGCTCCAAAAGCTTTGTCTGATATTAAACTTCAGCCTAAGGAAGATCTTCAGCAACCATTACCCAAAAATGTTAAACAGAAAGATGATTGCTTGGAATTATCTGCTTTTGACTATAAAGAAGCTCCCTTGACTCGGTCAGACTCTCCGTTACCAGATGACAGCTTTGCTCATAACATGTCTCAGTCAAGTACTGAGCAGAGTTCAGAGGAGCAGGAAGATAGTCAAGTAGAGCCTGAAGAGCGATGGGAATCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACCTGGGTTATGAGAATGATTCTGAATATTTGCCAGTGCTTGATATGGATGACCATGAACTGAATGAGCAATACTTGGGGTATGAGCTTAAAAATACAGATGAGTATGACAACATGTGCTCGGACGCCGATATTCTGTATGAACAGGGAACATGTGATGATTACAGATGTTTTGATACAGATTTTACTAGTGCCGGTGAAAGGAAAGTTTGTGGTTATTCCAGAGAGATAATGTTAGATTCTATATTTTCAAGGAAAAGGGTTCGGATGTCAGCTGCTGAGATGGCTGCTTATGACTCTGACTTAGATCTACGTGACCATCTGAGAAGACGCAGAGGGGTCAATGGCCCCCCTGTCACGGGTTTCTTAAAAAGACGTGAGTCATCTTCATTGATGGTTCGAAACCGGGAAAGGCATCAAAGGCAAGGCATTGATCAGCGGCAAAACAAAAGATTAACATCACAATTGGGATTTAGTTCAATTAGAGAGGTTGAAGATCTTTCAATTGCTAACAAGCAGAGATTATTTAGGCCTTCCCAACAAAATAGGCCAAGAAATCATTATAGAGAAAAACCAGCTAAACGGCCATTTCATTCATCTAGAAAAAAAGTATCCAGGAAACCAGTTGTGAAGCAACGGAACTTTATCCAGGAATCTGGTACATTTTCAGGGCCCAAGACTCTTGCAGAAATaaaagaagagaagatgaaGGCTGGTAAAAGTTCACACTGTGAAAGCTCCTCAGCTGGTTTACAGAATCCTAAACCTCTGCACGAAATTCTTAAAGACAGAACCGTGGATTGA 1590 0.4145 MDEDLLKRNTDCVYFLASPLTCKKGAECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDGHTGVPSEPAPSSLPATANKTMVPCYFYFNGFCNKGNRCSFLHGTDASLLAVKPLKNDNVKPLKNDNGNINALNNLENKTSPGNKTVASKPSETHVDQPLSAPKALSDIKLQPKEDLQQPLPKNVKQKDDCLELSAFDYKEAPLTRSDSPLPDDSFAHNMSQSSTEQSSEEQEDSQVEPEERWESSPGFDVLVHDESGNLGYENDSEYLPVLDMDDHELNEQYLGYELKNTDEYDNMCSDADILYEQGTCDDYRCFDTDFTSAGERKVCGYSREIMLDSIFSRKRVRMSAAEMAAYDSDLDLRDHLRRRRGVNGPPVTGFLKRRESSSLMVRNRERHQRQGIDQRQNKRLTSQLGFSSIREVEDLSIANKQRLFRPSQQNRPRNHYREKPAKRPFHSSRKKVSRKPVVKQRNFIQESGTFSGPKTLAEIKEEKMKAGKSSHCESSSAGLQNPKPLHEILKDRTVD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03927 529 MobiDBLite consensus disorder prediction 216 234 - -
Tsu04g03927 529 MobiDBLite consensus disorder prediction 450 471 - -
Tsu04g03927 529 MobiDBLite consensus disorder prediction 372 414 - -
Tsu04g03927 529 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 526 - -
Tsu04g03927 529 MobiDBLite consensus disorder prediction 434 529 - -
Tsu04g03927 529 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Tsu04g03927 529 MobiDBLite consensus disorder prediction 207 251 - -
Tsu04g03927 529 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Tsu04g03927 529 Pfam Zinc-finger containing family 7 63 IPR041686 -
Tsu04g03927 529 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Tsu04g03927 529 MobiDBLite consensus disorder prediction 137 169 - -
Tsu04g03927 529 MobiDBLite consensus disorder prediction 391 408 - -
Tsu04g03927 529 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Tsu04g03927 529 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Tsu04g03927 529 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Tsu04g03927 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 108 IPR000571 GO:0046872
Tsu04g03927 529 MobiDBLite consensus disorder prediction 137 160 - -
Tsu04g03927 529 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Tsu04g03927 529 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 526 - -
Tsu04g03927 529 Gene3D - 79 145 - -
Tsu04g03927 529 Gene3D - 3 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03927 Tsu-Chr4 48058173 48061292 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g03927 zf-CCCH_3 1.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03927 - - aprc:113847503 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03927 04 48058173 48061292 Tsu04g03927 04 48058173 48061292 ECH