Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03923 ATGGCTTATCCACACCACATTCCAACCTCTAGGATGTCACCACCCCGTTTCGCCACAAACAGTGACGCCATTGAGGTGAGGCCTCAATTCCCAATGATCAGTGACCGCCCTGAGCAACATTCAGGTTTTGAGCAACATTCCATCAAGAGGGCAAGAATGATTGGTAACAATCGTTCCGAGGCATTGCCATGCCCTCCTCCTAGGGTGATGCAACAACCTCCACCTCAATCGAACAGAGGAACTGGCCACATTTTCTACAAGACCCGCACTTGTACCAGGTTCACGTTCGGAAATTGTAGGAATGGTGACAATTGCAACTTTGCTCATGGGGAGGAGGAGCTAAGGCAGCCACCACCAAATTGGCAGGACTATGTTGGTCCACGCAAGGAGGAACGGGTGCAGGTAGGGAACTGGGATGATGATCAAAAAATCATCCAAAAGATGAAGCTGTGTAAGAAGTTTTACAATGGTGAGCAATGTCCTTACGGTGAAAAGTGTAGTTTTCTTCATGAAGATCCTGCTAAGTTTAGGGCTGATTCTTGGAAATCAAGAGAGTGTTCTGCGATAAGCATTGGGACTATTGGTTCCCCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCAATAGTGGTGTGACCAAGCAACCAAAGGGCACTTATTGGAAGACTAAGCTGTGTACCAAGTGGCAGAATACCGGAAGCTGTGCCTTTGGAGATGACTGTCACTTTGCTCATGGAGAATCAGACTTACAAGCTCCTGGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCGTAGCAAATTCTACAAAAGCTACCGTTCCAGCTTCACCAAATGCCTTATCAGTTTCTGCCAATGTTGAACCTTCTGCCCTCCCGGCAAGTCTACCTGTGGCAATGGATGTGGCAATGGATGAGAAAGCTAAGAAGATCTTGTCAAGATCcagattaaaaaataagaaactgTTTGGCCTTTATGCTGACTGGATCAATGACATAGGTCCTCTTCCCAATCCCAACTTTCCAAGTCCAACGGAAAATTAA 1044 0.4607 MAYPHHIPTSRMSPPRFATNSDAIEVRPQFPMISDRPEQHSGFEQHSIKRARMIGNNRSEALPCPPPRVMQQPPPQSNRGTGHIFYKTRTCTRFTFGNCRNGDNCNFAHGEEELRQPPPNWQDYVGPRKEERVQVGNWDDDQKIIQKMKLCKKFYNGEQCPYGEKCSFLHEDPAKFRADSWKSRECSAISIGTIGSPKSFGDGSDNLEGNSGVTKQPKGTYWKTKLCTKWQNTGSCAFGDDCHFAHGESDLQAPGGGIEAEAAVAVANSTKATVPASPNALSVSANVEPSALPASLPVAMDVAMDEKAKKILSRSRLKNKKLFGLYADWINDIGPLPNPNFPSPTEN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03923 347 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Tsu04g03923 347 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Tsu04g03923 347 SMART c3hfinal6 221 248 IPR000571 GO:0046872
Tsu04g03923 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 111 IPR000571 GO:0046872
Tsu04g03923 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 222 248 IPR000571 GO:0046872
Tsu04g03923 347 SUPERFAMILY CCCH zinc finger 220 252 IPR036855 GO:0046872
Tsu04g03923 347 Gene3D - 145 174 - -
Tsu04g03923 347 Gene3D - 214 253 - -
Tsu04g03923 347 Gene3D - 79 116 - -
Tsu04g03923 347 Pfam CCCH-type zinc finger 149 170 IPR041367 -
Tsu04g03923 347 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 335 - -
Tsu04g03923 347 ProSiteProfiles Zinc finger C3H1-type profile. 221 249 IPR000571 GO:0046872
Tsu04g03923 347 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 335 IPR045877 GO:0003729
Tsu04g03923 347 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Tsu04g03923 347 MobiDBLite consensus disorder prediction 62 83 - -
Tsu04g03923 347 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Tsu04g03923 347 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
Tsu04g03923 347 SUPERFAMILY CCCH zinc finger 83 116 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03923 Tsu-Chr4 48037319 48040497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03923 223 252 C3H Transcription Factor Family AT1G68200 60.000 4.50e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g03923 zf-CCCH 3.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03923 - - aprc:113846184 382.874