Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03916 ATGATTGGTAACAATCGTTCCGATGCATTGCCATGCCCTCCTCCTAGGGTGATGGTTCTGATAACTTGGAAAGAGTGTTCTGCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCAATAGTGGTGTAACCAAGCAACCAAAGGGCACTTTATGGAAGACTAAGCTGTGTACCAAGTGGCAGAATACTGGAAGCTGTGCCTTTGGAGATGACAGTCACTTTGCTCATGGAGAATCAGCAGCCATGGCTTATCCACACCACATTCCAACCTCTAGGATGTCACCACCCCGTTTTGCCACAAACAGTGACGTCATTGAGGTGAGGCCTCAATTCCCAATGATCAATAACCGCTCTGAACAACATTCAGGTTTTGAGCAACATTCCTTGAAGAGGGCAAGAATGACTGGTAACAATCATTCCAATGCATTGCCATGCCCTCCTCCTAGGATGATGCATTCTCCACCTCAATCGAACAAAGGAACTGGCCACATTTTCTACAAGACCCGCACTTGTACCAGGTTCATGTTTGGCAATTGTAGGAACGGTGACAATTGCAACTTTGCTCATGGGGAGGAGGAGCTAAGGCAGCTACCACCAAATTGGCAGGACTATGTTGGTCCGCGCAACGAGGAACAGGTGCAGGTAGGGAACTGggatgatgataaaaaaatcatcCACAAGATGAAGCTGTGTAAGAAGTTTTACAATGGTGAGCAATGTCCTTACGGTGAGAAGTGTAGTTTTCTTCATGAAGATCCTGCTAAGTTTAGGGCTGATTCTTGGAAATCAAGAGAGTGTTCTGCAATAAACATTGGGACTATTGGTTACCCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCGATAGTGGTGTGACCAAGCAACCAAAGGGCACCTATTGGAAGACAAAGCTGTGTACCAAGTGGCAGAATACTAGAAGCTTTCCCTTTGGAGATGACTGTCACTTTGCTCATGGAGAAGCAGGGAACACCAACAAGCTAGCTTTTCCAAGAAAACAAGAGTTGATAGACCTGATACTCCTCCTATAA 1056 0.4489 MIGNNRSDALPCPPPRVMVLITWKECSAKSFGDGSDNLEGNSGVTKQPKGTLWKTKLCTKWQNTGSCAFGDDSHFAHGESAAMAYPHHIPTSRMSPPRFATNSDVIEVRPQFPMINNRSEQHSGFEQHSLKRARMTGNNHSNALPCPPPRMMHSPPQSNKGTGHIFYKTRTCTRFMFGNCRNGDNCNFAHGEEELRQLPPNWQDYVGPRNEEQVQVGNWDDDKKIIHKMKLCKKFYNGEQCPYGEKCSFLHEDPAKFRADSWKSRECSAINIGTIGYPKSFGDGSDNLEGDSGVTKQPKGTYWKTKLCTKWQNTRSFPFGDDCHFAHGEAGNTNKLAFPRKQELIDLILLL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03916 351 Pfam CCCH-type zinc finger 230 251 IPR041367 -
Tsu04g03916 351 SUPERFAMILY CCCH zinc finger 51 80 IPR036855 GO:0046872
Tsu04g03916 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 40 83 - -
Tsu04g03916 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 83 332 - -
Tsu04g03916 351 SUPERFAMILY CCCH zinc finger 226 253 IPR036855 GO:0046872
Tsu04g03916 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 79 IPR000571 GO:0046872
Tsu04g03916 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 167 192 IPR000571 GO:0046872
Tsu04g03916 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872
Tsu04g03916 351 Gene3D - 45 81 - -
Tsu04g03916 351 Gene3D - 223 255 - -
Tsu04g03916 351 Gene3D - 295 331 - -
Tsu04g03916 351 Gene3D - 160 197 - -
Tsu04g03916 351 ProSiteProfiles Zinc finger C3H1-type profile. 166 193 IPR000571 GO:0046872
Tsu04g03916 351 PANTHER CCCH ZINC FINGER/TIS11-RELATED 83 332 IPR045877 GO:0003729
Tsu04g03916 351 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 83 IPR045877 GO:0003729
Tsu04g03916 351 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Tsu04g03916 351 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Tsu04g03916 351 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Tsu04g03916 351 SUPERFAMILY CCCH zinc finger 164 197 IPR036855 GO:0046872
Tsu04g03916 351 SUPERFAMILY CCCH zinc finger 301 329 IPR036855 GO:0046872
Tsu04g03916 351 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Tsu04g03916 351 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Tsu04g03916 351 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Tsu04g03916 351 SMART c3hfinal6 166 192 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03916 Tsu-Chr4 47990045 47991891 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g03916 zf-CCCH 1.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03916 - - aprc:113846184 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03916 04 47990045 47991891 Tsu04g03916 04 47990045 47991891 ECH