Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03910 ATGCATGACAAGCTTCTTCGTGAAGCTGTGGCTGCAACTGAACAGAAGTTCACCCAGTTTGTATTTGACAATAAAAACACTAATCCAGACGTAATGCATATGGGTTCTAGCTGTCTAATCGCTCTTATATGCAAAGGGACAGTATATATAGCCAACCTTGGTGATTCTAAAGTTGTGCCTGGCAAGTTTCCAgcagcaccaccaccaccatatGTGTTACCCGCCTACCAGTTAGCAGGAGATCACAGTTGTGACCATCGTCATAATAGAATAGCCTTGGAACAACAATTTCCAGGTGATCCTACTATTCTCTTGAAGGATGAAAATGGATGGAAGGTTAAAGGCTTATCCAAGGTTACCAATACTATTGGGGATGTCTATATAAAAAGAAGTCTAACCTATTGGCCAAAGTTTAAAAATGTGTCTCAACCAACTCGTGTTTCTGTTCTATTATcagaaccaaaaatatattcatgTATGATAAGATATTTTGATGAATTCGTTGTTCTTGCATCTCGTGGATTTTGGGAAATTATGACAAATGAGGAGGCAGTTTCAATTGTTGGAAGACATTCTCGTCGTGGCATTGCAAAAACACTTTTAAGGAAGGCATTGGAAAAGGCGGCAGCAAAAGTGAAAATGAGTTATAAAGATATCAGTGTCCTCATTGAGCCAACAAGTGGTAATACGAGAATCGAATTGGCTTTCCTAGCAGCAGCCAAAGGCTACAAGCTTATCATTACAATGCCAGCTTCAATGAGTCTTGAAAGAAGAACCATTCTTCTATCCTTTGGTGCTCAGTTGGTTCTGACAGATCCAGCTAAGGGAATGAAAGGGGCAGTTCAAAAAGTTGAAGAGATATTGGCCAAGACTCCAAATGCCTATATACTTCAACAATTCGAAAACTCTGCCAATCCAAAGAATGTCGATGGAATGAGATACCACCGTTTTGCACAGAGTCACACGGCCGAATTCCACATTTTTGACCAAAACAAGATGGATGAGGAGAGTTCTGAAGAATCAAGTGCTGAAGAAGAGGGTGCTAAAAGTGATGAGAATCTCAAGCCAGATGAGGAGATAGATGTTTCAAAACCCTCTGATTCAAATGAGAAAGTTGTGGAAGAAATTAACGAGAATGATTTGAATCCTTCTCCACATAAGCGGAGGAAAGGTGCTGATGGCAAGACTGCGGTGAACATGAAGGAACCTGTTGATGAGGCAGAAGTGGAAAACAAAGCAGTGACTTGCAATTAG 1254 0.3915 MHDKLLREAVAATEQKFTQFVFDNKNTNPDVMHMGSSCLIALICKGTVYIANLGDSKVVPGKFPAAPPPPYVLPAYQLAGDHSCDHRHNRIALEQQFPGDPTILLKDENGWKVKGLSKVTNTIGDVYIKRSLTYWPKFKNVSQPTRVSVLLSEPKIYSCMIRYFDEFVVLASRGFWEIMTNEEAVSIVGRHSRRGIAKTLLRKALEKAAAKVKMSYKDISVLIEPTSGNTRIELAFLAAAKGYKLIITMPASMSLERRTILLSFGAQLVLTDPAKGMKGAVQKVEEILAKTPNAYILQQFENSANPKNVDGMRYHRFAQSHTAEFHIFDQNKMDEESSEESSAEEEGAKSDENLKPDEEIDVSKPSDSNEKVVEEINENDLNPSPHKRRKGADGKTAVNMKEPVDEAEVENKAVTCN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03910 417 MobiDBLite consensus disorder prediction 325 417 - -
Tsu04g03910 417 SMART PP2C_4 10 224 IPR001932 -
Tsu04g03910 417 Pfam Protein phosphatase 2C 4 210 IPR001932 -
Tsu04g03910 417 PANTHER ALPHABET, ISOFORM E-RELATED 1 221 - -
Tsu04g03910 417 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 1 221 - -
Tsu04g03910 417 CDD PP2Cc 4 223 IPR001932 -
Tsu04g03910 417 MobiDBLite consensus disorder prediction 325 409 - -
Tsu04g03910 417 SUPERFAMILY PP2C-like 4 223 IPR036457 -
Tsu04g03910 417 ProSiteProfiles PPM-type phosphatase domain profile. 1 226 IPR001932 -
Tsu04g03910 417 Gene3D - 2 229 IPR036457 -
Tsu04g03910 417 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 216 306 IPR036052 -
Tsu04g03910 417 Pfam Pyridoxal-phosphate dependent enzyme 204 312 IPR001926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03910 Tsu-Chr4 47956317 47961219 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03910 1 219 PP2C-type Phosphatase Gene Family AT4G38520 37.220 4.25e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03910 K01738 - gmx:100101866 156.762