Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03907 ATGTTCCCAGGACCTCAAAATGTTGATCAGGCACAAGCACAACCTAGCTATGGCATTATAAAACCTGACAACCGCTTCTACAGGTTATGGCAGCATTTCCTTGTTCTGCTTTcggtttatttttgttttggttcaaCAATGCTGGGCACATTTAGCGCACCACCATCACCGCTATATCTTTGGATAACAAATGTTGCTGTTAGTGTCTTTTTCTTTGTCGACATTGTTTTATCCTTATTTTTTGTCGCTTATCGGGACAAAGTCACGTTTTCTATCGTGGACGATCGGAGAAGAATTGTTGCTAAAACTGTTAAAACAGTTTTTCTGGATGTCGTTTTAATTGTCCCGTTTGAGGTGGTCGCAAAACAATTCTACCCATCTAGCATCATATTATATCAATCATTCAGCATGCTTGCTTTACTTCGGGTTTTCTACTCCATAAGAATTCAGCGTTGCTTTTCCGAGCTTGAGGAGAATGAAAAAATCAACTTTATTGTGGTTCGCATTGCAAGGATGATGTGGGTTTGTTATTTGGTTTGCCACTATGGTGGCTGTGTGTTTTATCTGCTGGCGGCATCTCATCGTGATGCTAAAAATACATGGTTTTCATTAGTTGATCCTAACTTCGTCGAATTAGGATTCATTCAACGATACGTGACTTCAATGTACTTGGCGGTGATATCTTTCACCACAGTTGGGTATGGGGATTTGCACCCAATTTCTACGGATGAGATGGTGTTTTCGGTGATCTTTCTCTTAATTGATTTTGGATTGATAGCATATGTGACAACTACCGTAATTTATTTAGTTCTTCCTGACATTGGTCTCCTTGGAAAATATAGAGCACGTCGAGTGCGTGTATTGGCCTATTGTCGCCATTATCACTTATCTGACGATATTTGCAAGGAGGTGTCAGATCACCTTAAACTCGAATATCAATCACGAGCACAACCGTCCGAAGAAAATGGCATTCTGAACTCACTGCCCATACCAGTTAAAGGAAAAATTTTGAATGCTTTGTCCACTAAGCTGACAGATAACAGAATGCTTAACCGTTTATCAAACCCCATACGATTTCAACTGATACAAGCAATGGAGCCCGTAATGTTTCCGGCTAATACAAGTATAATCCTACAAAATGAAGCACCGATGTTTCTATATTTTGTTCTAAGCGGTTCTGTGGACTTAAACACTGGTGGTGGACAACCTGTTGACACGGTTACATCTGGAGAAGTTTTCGGTGAAACTTGCGTATTTTTCAATAGACCGCAAGCTTTCACCGCTACAACTAGCAGATTGAGTCAGCTGCTCATGATGGATCGTGTTAAACTCATGAGCATTCTTCAAAGCTGCCCAAAAGATACATCCAGTTTGATAAGTGGCCACCTTGAGGATTTAAACACCAAGCCATACCTGAATGAAGTTCGGTCAGAATTCGAAAATAATGCAAGAACAATCGGTAGGATTGATCTACCGGTAAGCTTGTTGTTTGCAGTCGAAAGGCGATATAGTCGACTGTTTGACAGACTTGTGGAAGAATATCCAGACCCTAATGAACGCGATAGTTCAGGGCGGACACTTTTGCACCTACTGGCATCAAGAAATGATATTCAGAAGTGCCGCAAGTTAATTGATATTGGGGCAAATCCAAATTTAACCGATTCGTCTGGAAATTACCCGCTCCAGATTTGGAACAATAATGGTGATGACGCATAA 1716 0.4033 MFPGPQNVDQAQAQPSYGIIKPDNRFYRLWQHFLVLLSVYFCFGSTMLGTFSAPPSPLYLWITNVAVSVFFFVDIVLSLFFVAYRDKVTFSIVDDRRRIVAKTVKTVFLDVVLIVPFEVVAKQFYPSSIILYQSFSMLALLRVFYSIRIQRCFSELEENEKINFIVVRIARMMWVCYLVCHYGGCVFYLLAASHRDAKNTWFSLVDPNFVELGFIQRYVTSMYLAVISFTTVGYGDLHPISTDEMVFSVIFLLIDFGLIAYVTTTVIYLVLPDIGLLGKYRARRVRVLAYCRHYHLSDDICKEVSDHLKLEYQSRAQPSEENGILNSLPIPVKGKILNALSTKLTDNRMLNRLSNPIRFQLIQAMEPVMFPANTSIILQNEAPMFLYFVLSGSVDLNTGGGQPVDTVTSGEVFGETCVFFNRPQAFTATTSRLSQLLMMDRVKLMSILQSCPKDTSSLISGHLEDLNTKPYLNEVRSEFENNARTIGRIDLPVSLLFAVERRYSRLFDRLVEEYPDPNERDSSGRTLLHLLASRNDIQKCRKLIDIGANPNLTDSSGNYPLQIWNNNGDDA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03907 571 SMART ANK_2a 490 519 IPR002110 GO:0005515
Tsu04g03907 571 SMART ANK_2a 523 552 IPR002110 GO:0005515
Tsu04g03907 571 Gene3D - 471 571 IPR036770 -
Tsu04g03907 571 Gene3D Jelly Rolls 314 469 IPR014710 -
Tsu04g03907 571 PRINTS EAG/ELK/ERG potassium channel family signature 64 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03907 571 PRINTS EAG/ELK/ERG potassium channel family signature 218 235 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03907 571 PRINTS EAG/ELK/ERG potassium channel family signature 244 255 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03907 571 ProSiteProfiles cAMP/cGMP binding motif profile. 349 465 IPR000595 -
Tsu04g03907 571 SUPERFAMILY Voltage-gated potassium channels 22 268 - -
Tsu04g03907 571 ProSiteProfiles Ankyrin repeat profile. 523 555 IPR002110 GO:0005515
Tsu04g03907 571 SUPERFAMILY cAMP-binding domain-like 279 456 IPR018490 -
Tsu04g03907 571 CDD CAP_ED 349 452 IPR000595 -
Tsu04g03907 571 ProSiteProfiles Ankyrin repeat region circular profile. 523 554 - -
Tsu04g03907 571 Gene3D - 29 270 - -
Tsu04g03907 571 PANTHER POTASSIUM CHANNEL AKT1 16 561 IPR045319 GO:0005249|GO:0006813
Tsu04g03907 571 Pfam Cyclic nucleotide-binding domain 369 450 IPR000595 -
Tsu04g03907 571 Pfam Ion transport protein 28 262 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu04g03907 571 PANTHER POTASSIUM CHANNEL AKT1 16 561 - -
Tsu04g03907 571 SUPERFAMILY Ankyrin repeat 495 563 IPR036770 -
Tsu04g03907 571 SMART cnmp_10 349 463 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03907 Tsu-Chr4 47938118 47942033 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03907 19 561 Ion Channels AT2G25600 33.938 2.12e-94 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03907 K21867 - egt:105975303 339.732