Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03903 ATGAAGTTTCAAATGTCTGATGCGGATGAGTTTCGTTGCTTCATTGGCGGCCTTGCATGGTCAACATCTGATAGGAAGTTAAAGGATGCATTTGAAAAGTATGGTAAGCTGCTTGAGGCAAAGgtgGTGGTTGACAAGTTCTCTAGACGTTCACGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAGGAGGCTATTGAGGCTATGAATGGAAGCGACTTGGATGGTCGAACTATTACAGTTGATAAAGCTCAGCCTCAAGGATCAAGTAGAGATGATGATGATCGTCACCGAGAACGTGGTTGTGACTCACGTGATCGCAATCGTGGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGTGGTGAATGCTTTTAG 387 0.447 MKFQMSDADEFRCFIGGLAWSTSDRKLKDAFEKYGKLLEAKVVVDKFSRRSRGFGFVTFDDKEAMEEAIEAMNGSDLDGRTITVDKAQPQGSSRDDDDRHRERGCDSRDRNRGRDYGGSRGSNGGECF 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03903 128 SMART rrm1_1 12 85 IPR000504 GO:0003723
Tsu04g03903 128 MobiDBLite consensus disorder prediction 90 116 - -
Tsu04g03903 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Tsu04g03903 128 PANTHER TRANSFORMER-2-RELATED 5 128 - -
Tsu04g03903 128 SUPERFAMILY RNA-binding domain, RBD 6 121 IPR035979 GO:0003676
Tsu04g03903 128 MobiDBLite consensus disorder prediction 72 128 - -
Tsu04g03903 128 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 128 - -
Tsu04g03903 128 Gene3D - 3 126 IPR012677 -
Tsu04g03903 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03903 Tsu-Chr4 47921622 47923461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03903 14 84 Eukaryotic Initiation Factors Gene Family AT4G34110 36.620 1.12e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03903 - - lang:109329957 220.705