Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03899 ATGATTGGTAACAATCGTTCCGATGCATTGCCATGCCCTCCTCCTAGGGTGATGGTTCTGATAACTTGGAAAGAGTGTTCTGCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCAATAGTGGTGTAACCAAGCAACCAAAGGGCACTTTATGGAAGACTAAGCTGTGTACCAAGTGGCAGAATACTGGAAGCTGTGCCTTTGGAGATGAATGTCACTTTGCTCATGGAGAATCAGTACCATGTTTATATGGCAGATTTTTTGCTGGTTGCTGTAATTCGCCATCTGCTATTGATAACAATCCTTTATCTAAGGATTACATATCAGTGTTGTTAAATGGCGACGCCATGGCGGAATGGCATGGCATATTTATTGACAGGCACCATTGGCAGTTTGTGAAGGGATCAGCCATGGCTTATCCACACCACATTCCAACCTCTAGGATGTCACCACCCCGTTTCGTCACTCACAGTGATGTCATTGAGGTGAGGCCTCAATTCCCAATGATTAATGACCGCTCTGAGCAACATTCAGGTTTTAGGCAACACTCCTTGAAAAGGGCAAGAATGACGGGTAACAATCATTCCAATGCATTGCCATTCCCTCCTCCTTCGATGATGCAGCCTCCACCTCAATCGAACAAAGGAACTGGCCACATTTTCTACAAGACCCACACTTGTACCAGGTTCGCGTTCGGCAATTGTAGGAACGGTGACAAGTGCAACTTTGCTCATGGGGAGGAGGAGCTAAGGCTGCCACCACCAAATTGGCAGGACTATGTTGGTCCGCGCAATGAGCACAAGGTGGAACGGGTGCAGGTAGGGAACTGGGATGACGATAAAACAATCATCCACAAGATGAAGCTGTGTAAGAAGTTTTACAATGGTGAGGAATGTCCTTACGGTGAGAAGTGTAGTTTTCTTCATGAAGATCCTGCTAAGTTTAGGGCTGATTCTTGGAAATCAAAAGAGTGTTCTGCAATAAGCATTGGGACTATTGTTTCCCCAAAGTCTTTTGGGGATGGTTCTGATAACTTTGTAGGCAATAGTGGTGTGACCAAGCAACAAAAGGGCACCTATTGGAAGACTAAGTTGTGTACCAAGTGGCAGAATACTGGAAGCCGGAAGCTGTGCCTTTGGAGATGA 1149 0.4569 MIGNNRSDALPCPPPRVMVLITWKECSAKSFGDGSDNLEGNSGVTKQPKGTLWKTKLCTKWQNTGSCAFGDECHFAHGESVPCLYGRFFAGCCNSPSAIDNNPLSKDYISVLLNGDAMAEWHGIFIDRHHWQFVKGSAMAYPHHIPTSRMSPPRFVTHSDVIEVRPQFPMINDRSEQHSGFRQHSLKRARMTGNNHSNALPFPPPSMMQPPPQSNKGTGHIFYKTHTCTRFAFGNCRNGDKCNFAHGEEELRLPPPNWQDYVGPRNEHKVERVQVGNWDDDKTIIHKMKLCKKFYNGEECPYGEKCSFLHEDPAKFRADSWKSKECSAISIGTIVSPKSFGDGSDNFVGNSGVTKQQKGTYWKTKLCTKWQNTGSRKLCLWR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03899 382 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Tsu04g03899 382 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Tsu04g03899 382 SMART c3hfinal6 222 248 IPR000571 GO:0046872
Tsu04g03899 382 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Tsu04g03899 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 139 375 - -
Tsu04g03899 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 40 82 - -
Tsu04g03899 382 SUPERFAMILY CCCH zinc finger 220 253 IPR036855 GO:0046872
Tsu04g03899 382 Gene3D - 283 314 - -
Tsu04g03899 382 Gene3D - 45 80 - -
Tsu04g03899 382 Gene3D - 216 253 - -
Tsu04g03899 382 PANTHER CCCH ZINC FINGER/TIS11-RELATED 139 375 IPR045877 GO:0003729
Tsu04g03899 382 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 82 IPR045877 GO:0003729
Tsu04g03899 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 79 IPR000571 GO:0046872
Tsu04g03899 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 248 IPR000571 GO:0046872
Tsu04g03899 382 ProSiteProfiles Zinc finger C3H1-type profile. 222 249 IPR000571 GO:0046872
Tsu04g03899 382 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Tsu04g03899 382 SUPERFAMILY CCCH zinc finger 51 79 IPR036855 GO:0046872
Tsu04g03899 382 SUPERFAMILY CCCH zinc finger 284 312 IPR036855 GO:0046872
Tsu04g03899 382 Pfam CCCH-type zinc finger 289 310 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03899 Tsu-Chr4 47887377 47889153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03899 52 103 C3H Transcription Factor Family AT1G68200 45.455 3.79e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g03899 zf-CCCH 3.7e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03899 - - mtr:MTR_4g113970 290.041