Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03898 ATGGTGAATGATCGAGGAAGAATTGCTACTAAAACTTTAAAAACAAGGATTATGGATTTGGTTTTCATAGTTCCGTTTGAGCTAGTTGCAACACGATTCCATCCACCTAGCAAACTGTATTATGCATTGAGTACGTTGGCGCTACTTCGTGTTTTCTACTCCACAAGAATTCATCGTTGGTTTTCTGaCTTCGAGGAGAATGAAAAAATCAACTTTACTATGGTTCGCATTGCAAAGATGATATGGaGAGCACGTCGAGTGCGTGTATTAAGCTTTTGTCGACAGAATAGATTCCCCGATGAGCTTTGTAATGAGGTGTCATCTCATCTTAAACTAGAGTACCTATCACAATCACAACCATCCGAAGAAAATGGTATTCTGCAATCATTGCCCACGACGATTAAAGgaaaaattttaattgctttgTCCAATACGGTGACAAATAACAATCTGTTTAATCATTTTTCAAACTCCATACAACTTCAACTgATACAAGCAATGGAGCCTGTATTATTTCCGGCTAATTCAAATGTCATCCTAGAAAATGAAGCACCAATGTTTCTCTATTTTGTTCTTAGAGGTTCTGTGGACTTAATATTTCCAGATGGTATTGTCACAACAGTTAGACCTGGACAAGTTTTCGGTGAAGTTTGTGTATTTTTCAATACACCTCAAGTTTTCACCGCTACCACTAGAGAATGGAGTCAACTTCTCATGTTGGATCGAGTGAAACTCTTAAACATTCTAGAGGGCTGCGCTAGCGATACATCTCAGATGATAAGTGATTACTTTGAGCAATTACCACCGGAGCAAGACAATCCATCTATGGATAATGTTTTGTTAGCTTTTGAAAGAAAAGCAATAACATTTGGTAGAATTGGTCTTCCTGTAAGCTTGTGGTTTGCCGTTAGAAGAGGATATAATCAATTGTTTGATGAACTTGTTGAACAATTTTGTGATCCTAATGAATGTGACAAATCGGGACAGACAGCTATGCACCTAGCAGCATCAAGTGGAGATATTGACAAGGTTAATAGGCTACTTGCAATTGGGGCAAATCCAAATATAAGGgATTTGTTTGGAAAAACAGCACTACATGTGGCTATAGAAAAAGACAAATTTCCTATGGTTCAGTATCTGGTGGAAACTGGTGTACCTATGGATGATGAGGCATATGTCATGGCACAGAGAAATGGTAGTGAAGAAATGATAAATTATATGGAGTTAGGGCTACTTCCGCAATTCATTTATCAGGTGGAGTAA 1263 0.3745 MVNDRGRIATKTLKTRIMDLVFIVPFELVATRFHPPSKLYYALSTLALLRVFYSTRIHRWFSDFEENEKINFTMVRIAKMIWRARRVRVLSFCRQNRFPDELCNEVSSHLKLEYLSQSQPSEENGILQSLPTTIKGKILIALSNTVTNNNLFNHFSNSIQLQLIQAMEPVLFPANSNVILENEAPMFLYFVLRGSVDLIFPDGIVTTVRPGQVFGEVCVFFNTPQVFTATTREWSQLLMLDRVKLLNILEGCASDTSQMISDYFEQLPPEQDNPSMDNVLLAFERKAITFGRIGLPVSLWFAVRRGYNQLFDELVEQFCDPNECDKSGQTAMHLAASSGDIDKVNRLLAIGANPNIRDLFGKTALHVAIEKDKFPMVQYLVETGVPMDDEAYVMAQRNGSEEMINYMELGLLPQFIYQVE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03898 420 SMART cnmp_10 151 264 IPR000595 -
Tsu04g03898 420 PANTHER POTASSIUM CHANNEL AKT1 85 385 IPR045319 GO:0005249|GO:0006813
Tsu04g03898 420 SMART ANK_2a 360 389 IPR002110 GO:0005515
Tsu04g03898 420 SMART ANK_2a 327 356 IPR002110 GO:0005515
Tsu04g03898 420 SMART ANK_2a 294 323 IPR002110 GO:0005515
Tsu04g03898 420 Pfam Ankyrin repeats (3 copies) 299 385 IPR002110 GO:0005515
Tsu04g03898 420 ProSiteProfiles cAMP/cGMP binding motif profile. 151 266 IPR000595 -
Tsu04g03898 420 ProSiteProfiles Ankyrin repeat profile. 360 392 IPR002110 GO:0005515
Tsu04g03898 420 Gene3D Jelly Rolls 116 268 IPR014710 -
Tsu04g03898 420 PANTHER POTASSIUM CHANNEL AKT1 1 81 - -
Tsu04g03898 420 SUPERFAMILY cAMP-binding domain-like 81 256 IPR018490 -
Tsu04g03898 420 ProSiteProfiles Ankyrin repeat region circular profile. 360 388 - -
Tsu04g03898 420 Pfam Cyclic nucleotide-binding domain 171 250 IPR000595 -
Tsu04g03898 420 SUPERFAMILY Ankyrin repeat 299 407 IPR036770 -
Tsu04g03898 420 Gene3D - 297 409 IPR036770 -
Tsu04g03898 420 CDD CAP_ED 151 260 IPR000595 -
Tsu04g03898 420 ProSiteProfiles Ankyrin repeat profile. 327 359 IPR002110 GO:0005515
Tsu04g03898 420 ProSiteProfiles Ankyrin repeat region circular profile. 327 358 - -
Tsu04g03898 420 PANTHER POTASSIUM CHANNEL AKT1 1 81 IPR045319 GO:0005249|GO:0006813
Tsu04g03898 420 PANTHER POTASSIUM CHANNEL AKT1 85 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03898 Tsu-Chr4 47882312 47885264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03898 77 387 Ion Channels AT2G25600 34.891 2.38e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03898 K21867 - egt:105975303 181.415