Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03897 ATGTTGCCAAGGATTTGCATGAAGAAGCCTCATGTTCTTGAAAACGATGACACCACGGCATGGTTCACAGCGCTTGAGAGGCACCATAAGGGGAAATTCTCCATGGCTGCTTATCAAGCAAACGCTGTCATGGATGATTACAGTCAAGTTGAAGTGGATGGCAACAGTCTTTTTGTCGGAATATATGATGGACATAATGGCACGAATGCAGCAAAGTTCACATCAAATTACATTTTTCAGGAACTATCAAggttgatTGGTGAAAACAACAATATGATGAATGGTCGGCTTCTTCGTGAAGCGGTGGCTGCAACTAAAGAGAAGTTCACCCATGTTGTAATCGCTCTTATATGGAAAGAGACACTATATATGGCCAACCTTGGCGATTCTCGAGTTGTGTTTGGCATTATTGACGTCGATCCACCGCTTATGCATGCATTACCTGGCGAAGCCGAACGGTTAACAAGAGATCACGATTGTGAGGATAGTTGTAATAGAGTAACATTGCTACAACAATTTCCATATGATCATACTCTTCTCTGCAAGGTTAGAGGCTACTCAAAGTTTCATCGATCTATTGTACCGTACTCAAAGTTTCATCGATCTATTGTATCGTCAGGACTAAATATAGGCTCAAGAATCTTAAGATATGGTTATAAATTCTTTATTCTTGCATCTCATGGATTTTGGGAAATTATGACAAATGAGGAGGCAGTTTCAATTGTTGCAAGACATTCTCGACGTgGCATTGCAAAAACACTTTTAAGGAAGGCATTGGAAAAGGTGGCAGCAAAAGAGAAAATGAGTTATAAAGACATTGTACTTTCTCTTGATAGAAAGAAATATCATGATGATATCACAATAATAGTTGTTTTTCTGGATCTAGGTAAAGACAAGCCTCTGTGGAAGAGAAATGTACCAAAACTCTCATACAAATCCCCCTCCCACGCATAG 954 0.3931 MLPRICMKKPHVLENDDTTAWFTALERHHKGKFSMAAYQANAVMDDYSQVEVDGNSLFVGIYDGHNGTNAAKFTSNYIFQELSRLIGENNNMMNGRLLREAVAATKEKFTHVVIALIWKETLYMANLGDSRVVFGIIDVDPPLMHALPGEAERLTRDHDCEDSCNRVTLLQQFPYDHTLLCKVRGYSKFHRSIVPYSKFHRSIVSSGLNIGSRILRYGYKFFILASHGFWEIMTNEEAVSIVARHSRRGIAKTLLRKALEKVAAKEKMSYKDIVLSLDRKKYHDDITIIVVFLDLGKDKPLWKRNVPKLSYKSPSHA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03897 317 CDD PP2Cc 39 293 IPR001932 -
Tsu04g03897 317 Pfam Protein phosphatase 2C 51 261 IPR001932 -
Tsu04g03897 317 ProSiteProfiles PPM-type phosphatase domain profile. 32 293 IPR001932 -
Tsu04g03897 317 SMART PP2C_4 25 291 IPR001932 -
Tsu04g03897 317 SUPERFAMILY PP2C-like 31 294 IPR036457 -
Tsu04g03897 317 PANTHER ALPHABET, ISOFORM E-RELATED 16 297 - -
Tsu04g03897 317 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 16 297 - -
Tsu04g03897 317 Gene3D - 8 298 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03897 Tsu-Chr4 47871099 47872251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03897 21 316 PP2C-type Phosphatase Gene Family AT5G06750 35.191 1.14e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03897 K01102 - tcc:18593516 190.274