Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03892 ATGACAACCATCACCACACCTTACAGAGATGAACCAGATTACGACAGCAGCTCCTCCTCCATCACCGTACCGGAATCAACCCGAAGCTGGATGAGCAACCTCAGCTTCGGAAGCCGTCGTCGTCGAAGCTCCGTTTCCATTTCTTCTACgaccacatacacctcttcactTTTAGGTTCCAACGCTAAACCTCACAAAGCAAACCAAGTTGCATGGGAAGCCATGAGTAGACTCCGACTCGACAAAGGTCGAGTCGGACTCGACCATTTCCGAATCTTAAAAAGACTCGGAAGCGGTGACATAGGTAATGTATACCTTTGTCAGATAAGAAACCCTGTGGTAGGTTTACCACAGTGTTTTTATGCTATGAAAGTTATTGATAGAGAAGCACTTGCTATAAGGAAAAAGCTTCAAAGAGCAGAGATGGAGAAAGAGATTTTGGGTATGCTTGATCATCCTTTTTTGCCTACTTTGTACACTGAGTTTGATGCTTCTCATTACTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTTCTCGCCAACGCCAACCTGGGAAGCGCTTTTCCTTATCATCCACTAAATTTTATGCAGCTGAGACACTATTGGCAATAGAATATCTACACATGATGGGAATAGTATATAGAGATTTAAAGCCAGAGAATGTTTTAGTAAGAGAAGATGGACACATAATGCTTTCAGATTTTGATCTTTCACTTAAATGTGATGTAGTTCCAAAGCTCttaagaaacaaaacaagatTAGAAAGAAGCATCAAAACTACAACAAGAAAATCTTCAACAGCTTCTTGTATTTCCCCTATGCAACCAGTTTTGTCTTGTTTcttatcatcatcaatcaagaaaaagaaaacaacacttGAAACAGTTATAAGAGAAAATGTTCAAGAAGAGTTTGAGGTTGATCTTGATCCTGATTTTGTAGCTGAACCAATTGATGCAAGATCAAAATCATTTGTAGGGACACATGAATATTTAGCACCAGAAGTTATTTTAGGACAAGGTCATGGAAGTGCTGTAGATTGGTGGACATTTGGTGtttttttgtatgaaatgtTATATGGAAGAACACCATTTAAAGGTGAAAACAATGAGAAAACATTGGTCAACATTTTGAAACAACCTTTGACTTTTCCTAGAATTGGTGTTAGTAGTAGTAATGAGTTTGAAGAAATGGTGAAAGTTCAAGATCTTATTAGTAAATTGTTGGTGAAGAATCCTAATAAGAGAATTGGAAGTTGTTTGGGTTCTGTTGAGATTAAAAGACATGAATTTTTTAAAGGTGTGAATTGGGCTTTGATTAGATCTGTTAGACCCCCTGAGGTTCCTAGTGATAAGAATAAGATTAGGAATAGGGTTTTGGTACCTAAGTTAAGCAAGAAAGAAAGAGATCAACCATTTCAGCTTAAACGTCAGTTCGATTACTTCTGA 1461 0.3607 MTTITTPYRDEPDYDSSSSSITVPESTRSWMSNLSFGSRRRRSSVSISSTTTYTSSLLGSNAKPHKANQVAWEAMSRLRLDKGRVGLDHFRILKRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVIDREALAIRKKLQRAEMEKEILGMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYASRQRQPGKRFSLSSTKFYAAETLLAIEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRNKTRLERSIKTTTRKSSTASCISPMQPVLSCFLSSSIKKKKTTLETVIRENVQEEFEVDLDPDFVAEPIDARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLTFPRIGVSSSNEFEEMVKVQDLISKLLVKNPNKRIGSCLGSVEIKRHEFFKGVNWALIRSVRPPEVPSDKNKIRNRVLVPKLSKKERDQPFQLKRQFDYF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03892 486 PANTHER FLIPPASE KINASE 1-RELATED 7 486 - -
Tsu04g03892 486 Gene3D Transferase(Phosphotransferase) domain 1 323 454 - -
Tsu04g03892 486 Pfam Protein kinase domain 326 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03892 486 Pfam Protein kinase domain 91 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03892 486 SMART serkin_6 90 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03892 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Tsu04g03892 486 MobiDBLite consensus disorder prediction 1 23 - -
Tsu04g03892 486 Gene3D Phosphorylase Kinase; domain 1 88 174 - -
Tsu04g03892 486 Gene3D Transferase(Phosphotransferase) domain 1 175 244 - -
Tsu04g03892 486 CDD STKc_phototropin_like 88 453 - -
Tsu04g03892 486 PANTHER PROTEIN KINASE PINOID 2 7 486 - -
Tsu04g03892 486 Coils Coil 123 143 - -
Tsu04g03892 486 ProSiteProfiles Protein kinase domain profile. 90 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03892 486 SUPERFAMILY Protein kinase-like (PK-like) 72 454 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03892 Tsu-Chr4 47844831 47846564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03892 1 486 AGC Kinase Gene Family AT2G26700 59.032 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tsu04g03892 Pkinase 7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03892 K08286 - gmx:100777988 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03892 04 47844831 47846564 Tsu04g03892 04 47844831 47846564 ECH