Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03887 ATGGAAGACAGAAAAGTACACACGATTGCTGTTATATCAGTTATTTCCTTAATAATCGTGATAATCATTTGTCGTGTTTCCTTAAAACTCTCAAAAGCTTTTTTCTTAATCTGTGGTGCATCAATAGCAATAATTCTTGCTGTCTTTTCATGTTTACTCATAAGACAACGTTACAACAACAGAAGAAAAGTGTTGGAATCACAGTTAAAATCAGAAGGTCGTGAGCTTAGAATTGAGTACAGTTTCTTAAGAAAAATTGCAGGAGTACCAACAAAATTTCGATACAAAGAACTCGAAGAAGCAACAGATGATTTTCAAGCAGTAATTGGTAAAGGGTCATCAGGTTGCGTTTTCAAAGGCATTTTGAATGATGGAACTTCAGTTGCAGTGAAAAGAATTAATGGTGAAGAAAGAGGTGAAAGAGAATTTAGATCAGAAGTTTCAGCTATTGCTAGTGTTCAACATGTTAATCTTGTGAGACTTTTTGGTTATTGTAATTCACCAACACCACCTAGATATCTTGTTTATGAGTTTATTCCAAATGGTTCATTAGATTGTTGGATTTTTCCTATGAAAGAAACAAGGACACGTAGATGTGGTTGTTTACCTTGGAATTTAAGGTATAATGTTGCTATTGATGTTGCTAAAGCATTAAGTTATCTTCATCATGATTGTAGATCTAGAATTTTGCATCTTGATGTGAAACCAGAGAATATATTACTTGATGAAAATTATAAAGCACTTGTTACTGATTTTGGTCTTTCAAAGCTTGTTGGAAAAGATGAGAGTCAAGTTATGACAACAATAAGAGGAACTAGAGGCTATTTAGCACCTGAATGGTTATTGGAACGTGGAATTTCTGAGAAAAGTGATATTTATAGTTATGGTATGGTTTTGTTAGAGATGATTGGAGGGAGAAGAAATGTTTCTAAAGTTGAAGATCCTAGAGATAAGAGTAAGAAAAAGTGGGAATTTTTTCCTAAGATTGTGAATGAGAAATTAAGGGAAGGGAAATTGATGGAAATTGTGGATCAAAGGGTAGTGGAAAGTGGGAACTTTGATGAGAATGAGGTGAAAAGATTGGTGTTTATTGGTTTGTGGTGTATACAAGAGAAACCAAGATTGAGACCTAGTATGGTTGAAGTTGTTGATATGCTTGAAGGACGTGTGACTGTGGAAGAACCACCAGGTACTAGAATGATTCTTGTTGATATGTTAGCTGATGATGAAGATTCTGCAGATCATCATAGAAATCTAGCTAGATTATTGACTCCTGTGTCTAGTAATGTTGATTGTACCTCTACTTATTCTTTAGGATCCCCTATGTCTATTTTCTCTGGTAGATAA 1347 0.343 MEDRKVHTIAVISVISLIIVIIICRVSLKLSKAFFLICGASIAIILAVFSCLLIRQRYNNRRKVLESQLKSEGRELRIEYSFLRKIAGVPTKFRYKELEEATDDFQAVIGKGSSGCVFKGILNDGTSVAVKRINGEERGEREFRSEVSAIASVQHVNLVRLFGYCNSPTPPRYLVYEFIPNGSLDCWIFPMKETRTRRCGCLPWNLRYNVAIDVAKALSYLHHDCRSRILHLDVKPENILLDENYKALVTDFGLSKLVGKDESQVMTTIRGTRGYLAPEWLLERGISEKSDIYSYGMVLLEMIGGRRNVSKVEDPRDKSKKKWEFFPKIVNEKLREGKLMEIVDQRVVESGNFDENEVKRLVFIGLWCIQEKPRLRPSMVEVVDMLEGRVTVEEPPGTRMILVDMLADDEDSADHHRNLARLLTPVSSNVDCTSTYSLGSPMSIFSGR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03887 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Tsu04g03887 448 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Tsu04g03887 448 Coils Coil 55 75 - -
Tsu04g03887 448 SUPERFAMILY Protein kinase-like (PK-like) 85 387 IPR011009 -
Tsu04g03887 448 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Tsu04g03887 448 Gene3D Transferase(Phosphotransferase) domain 1 179 395 - -
Tsu04g03887 448 PANTHER RECEPTOR-LIKE KINASE 1 448 - -
Tsu04g03887 448 Pfam Protein kinase domain 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03887 448 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 448 - -
Tsu04g03887 448 ProSiteProfiles Protein kinase domain profile. 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03887 448 SMART serkin_6 103 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03887 Tsu-Chr4 47810568 47812055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03887 1 398 Receptor kinase-like Gene Family AT5G20050 66.833 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g03887 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03887 - - gmx:100779485 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03887 04 47810568 47812055 Tsu04g03887 04 47810568 47812055 ECH