Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03879 atggtGATTCCTATGACTATGTGTGGTCAAGAAGAACTCGAATTATCAAGAGATGGCAGTCAATATAGTCTCTCCACCGGAATATTACCTTCTCTCGGTGCCAGAAGTAACCGCAGAGTTAAACTCCGACCTTTCATTATATCTCCTTACGACCGCCGTTACAGGGCATGGGAAACTTTCCTGGTTACACTGGTTGTGTATACTGCTTGGGTTTCTCCATTTGAATTCGGATTCCTTAAGAAACCACAAAAACCACTTTCTATTTCGGATAATATTGTCAATGCAATCTTTGCTGTAGATATAGTTCTCACATTCTTTGTGGCTTTCATCGACAAAACTACCTATTTGTTCGTAGATGAACCAAAACAGATTGCTTGGAAATATATGAAAACTTGGCTGGCATTTGATCTTATCTCCATCATTCCTTCAGAACTTGCTGTAGGGCGGCTATCTTATGGCGTATTCAACATATTTCGACTTTGGCGTCTTCGAAGAGTTAGCGCTTTGTTTTCTCGGCTTGAGAAGGACCGAAACTATAACTATTTCTGGGTTCGGTGCGCAAAGCTTATTTGTGTTACCCTTTTCGCTGTGCATTCTGCTGGATGCTTTTATTATCTTCTTGCTGCGCGTTATCATGATCCCCAAAAGACGTGGATTGGCCAAACAATGGCCAATTTCCTTCATGAGACCTTATGGACAAGATATGTGACGACTATTTACTGGTCGATCACTACTTTAACAACAGTTGGTTATGGAGATTTGCATCCGGTGAATGAAAGGGAGATGATCtttgtcatattttatatgCTCTTTAATCTCGGATTAACAGCATATCTGATTGGTAACATGACTAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGAGATACCATACAAGCTGCATCAAGTTTTGCTCATAGGAATCAATTACCCCCTCGTTTACAAGATCAAATGCTCGCGCACTTGTGTTTGAAGTTTAGAACAGACTCAGAGGGGTTGCAGCAACAAGAGACACTCGATTCGCTTCCTAAAGCCATCAGATCAAGCATTTCACATTATCTTTTCTATTCTTTGATGGACAAGGTCTACTTATTCAAAGGAGTTTCGAATGATTTGCTCTTTCAATTGGTATCGGAGATGAAGCCAGAGTATTTTCCACCTAAAGAAGATGTTATCTTACAAAATGAAGCTCCAACTGATTTTTACATTCTAGTCACTGGTGCCGTGGACTTAATAGTTCTCAAAGGCGGCGTTGAACagGTTGTCGGGGAGGCGAAAACAGGAGAACTTTGTGGCGAGATTGGTGTACTTTGCTATAAACCGCAACATTTTACCGTTAGAACCAAGCGATTAAGTCAACTGCTGAGGCTGAACCGTACCACTTTCTTGAATATTGTTCAAGCTAACGTTGGGGACGGAACCATAATCATGAATAATCTTCTTCAGCACTTGAAAGAGCTTAATGATCCAATCATGGAGGGAGTTTTAGTAGAGACTGAGAACATGTTAGCTCGTGGTAGAATGGACCTACCAGTTAGTCTATGCTTTGCAGCAGCAAGAGGAGATGATTTATTGATACATCAATTGTTGAAAAGGGGTTTGGATCCAAATGAATCTGACAACAATGGAAGAACAGCTTTGCATATAGCAGCATgtaaaggaaaagaaaattgtGTTTTACTTCTGTTGGATTATGGGGCGAATCCGAATATTAGAGATTCGGATGGAAATGTAGCACTGTGGGAAGCTATACTTGGTGAACATGAATCAGTGATCAAAGTTTTGGTAGAAAATGGTGCTACATTGCAAAGTGGTGATGTTGGTCAATATGCATGCAGTGCAGTTGAACAAAACAATCTCAATTTGTTGCAAGCAATTACGCGTTACGGAGGAGATATCACACTTCCAAATACTAGCGTTGGAACTACGGCTTTACATGTGGCAGTGTCCGAAGACAACGTAGAACTTGTCAAATTCCTCTTAGATCATGGTGCTAACATGGACACACCAGAAAAATATGGTTGGACTCCAAGAGCTTTGGCTGATCAACAAGGACATACAGAAATCAAAGCCATTTTTGATGCCAAAGGAGAACAACCTAAGATTCAATCTTTTGTTTCTATGCCTATTCCTGAGAGGCAGGGTAGTGGTACTACTAAGGTGAGGTACCTTGGTAGATTTACAAGTGAGCCAACAATGCCTATAGCTCAAGATGGATCATTTCGTGGAAACGATAATGGTTCGTGGATGCAACCTCGTCCGAGGCGTAGGAATAATAACTTTCATAACTCACTCTTCGGGATAATGTCGGCGGCAAACAAAGGAGAAAATGATCAGTTTTTCAATGTTAAGATGAATAACAACAATGCAAGAAATGGTATGAAGAATATTGTGCATCCGACTAGAGTAATCATTAGTTGTCCTGAAAAAGGTGAGATTGCTGGGAAGCTTGTATTGCTACCTGAAAGTTTCAAAGAGTTACTTGAGATTGGAGCTAAGAAATTTGGTATAGTTGTTACTAAGGTTGTTTGCAAAGATGGAGCTGGAATTGATGATATTGAGGTCATAAGAGATGGTGATCATCTTGTTTTTGTTGGTGATGGTGAGGAGCTACATTCTAATGGTGTCATTCCATAG 2646 0.3983 MVIPMTMCGQEELELSRDGSQYSLSTGILPSLGARSNRRVKLRPFIISPYDRRYRAWETFLVTLVVYTAWVSPFEFGFLKKPQKPLSISDNIVNAIFAVDIVLTFFVAFIDKTTYLFVDEPKQIAWKYMKTWLAFDLISIIPSELAVGRLSYGVFNIFRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHSAGCFYYLLAARYHDPQKTWIGQTMANFLHETLWTRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLIVLKGGVEQVVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAAARGDDLLIHQLLKRGLDPNESDNNGRTALHIAACKGKENCVLLLLDYGANPNIRDSDGNVALWEAILGEHESVIKVLVENGATLQSGDVGQYACSAVEQNNLNLLQAITRYGGDITLPNTSVGTTALHVAVSEDNVELVKFLLDHGANMDTPEKYGWTPRALADQQGHTEIKAIFDAKGEQPKIQSFVSMPIPERQGSGTTKVRYLGRFTSEPTMPIAQDGSFRGNDNGSWMQPRPRRRNNNFHNSLFGIMSAANKGENDQFFNVKMNNNNARNGMKNIVHPTRVIISCPEKGEIAGKLVLLPESFKELLEIGAKKFGIVVTKVVCKDGAGIDDIEVIRDGDHLVFVGDGEELHSNGVIP 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03879 881 Gene3D - 513 697 IPR036770 -
Tsu04g03879 881 Gene3D Jelly Rolls 332 492 IPR014710 -
Tsu04g03879 881 PRINTS Ankyrin repeat signature 546 561 IPR002110 GO:0005515
Tsu04g03879 881 PRINTS Ankyrin repeat signature 659 673 IPR002110 GO:0005515
Tsu04g03879 881 SUPERFAMILY Ankyrin repeat 516 696 IPR036770 -
Tsu04g03879 881 PANTHER POTASSIUM CHANNEL AKT1 10 873 IPR045319 GO:0005249|GO:0006813
Tsu04g03879 881 SUPERFAMILY Voltage-gated potassium channels 49 288 - -
Tsu04g03879 881 PANTHER K+ TRANSPORTER 1-RELATED 10 873 - -
Tsu04g03879 881 Pfam KHA, dimerisation domain of potassium ion channel 805 867 IPR021789 -
Tsu04g03879 881 ProSiteProfiles cAMP/cGMP binding motif profile. 367 469 IPR000595 -
Tsu04g03879 881 CDD CAP_ED 367 472 IPR000595 -
Tsu04g03879 881 ProSiteProfiles Ankyrin repeat profile. 545 577 IPR002110 GO:0005515
Tsu04g03879 881 Pfam Cyclic nucleotide-binding domain 386 471 IPR000595 -
Tsu04g03879 881 ProSiteProfiles Ankyrin repeat profile. 643 675 IPR002110 GO:0005515
Tsu04g03879 881 SUPERFAMILY cAMP-binding domain-like 292 487 IPR018490 -
Tsu04g03879 881 Pfam Ankyrin repeats (3 copies) 517 606 IPR002110 GO:0005515
Tsu04g03879 881 Pfam Ankyrin repeats (3 copies) 617 692 IPR002110 GO:0005515
Tsu04g03879 881 Gene3D - 56 288 - -
Tsu04g03879 881 ProSiteProfiles KHA domain profile. 805 881 IPR021789 -
Tsu04g03879 881 ProSiteProfiles Ankyrin repeat region circular profile. 545 576 - -
Tsu04g03879 881 SMART ANK_2a 643 672 IPR002110 GO:0005515
Tsu04g03879 881 SMART ANK_2a 545 574 IPR002110 GO:0005515
Tsu04g03879 881 SMART ANK_2a 512 541 IPR002110 GO:0005515
Tsu04g03879 881 SMART ANK_2a 578 607 IPR002110 GO:0005515
Tsu04g03879 881 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03879 881 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03879 881 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03879 881 PRINTS EAG/ELK/ERG potassium channel family signature 235 252 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03879 881 PRINTS EAG/ELK/ERG potassium channel family signature 261 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03879 881 PRINTS EAG/ELK/ERG potassium channel family signature 279 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu04g03879 881 ProSiteProfiles Ankyrin repeat profile. 578 610 IPR002110 GO:0005515
Tsu04g03879 881 SMART cnmp_10 367 484 IPR000595 -
Tsu04g03879 881 ProSiteProfiles Ankyrin repeat region circular profile. 643 671 - -
Tsu04g03879 881 Pfam Ion transport protein 55 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03879 Tsu-Chr4 47682296 47688784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03879 14 870 Ion Channels AT2G25600 62.831 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03879 K21867 - gmx:100819491 1407.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03879 04 47682296 47688784 Tsu04g03879 04 47682296 47688784 ECH