Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03878 ATGTGCAAAGGAACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTTTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAAACATTTGAGGACAACTCCTGGCGTAAAATAAAGTTCCGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTAATTGCTGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGGAACTTCAGGAACTCATTTGATGATGGGTGGGATAGGATACTGTCAAAGCACCCTATACCATTTTATTATTGTATTGGTGTGGTGGCCTTCTTTGTACTTATTGGATTTTTTGGCCTCATACTGCATTGTTCTTCCCTCAATAGCAATGACCCCAGAATGGCTGGTTGTCAAAACTGTTGTTATGGATGGGGAATCTTGGACTGCTTTCCTGCGTCAATGGAGGCATGCTTCGCCcttgtggttgtttttgttgtcATCTTTGCTATTCTTGGAGTTGCTTATGGTTTTCTTGCAGCCACCATGGGAATTCAAAGAATTTGGCAGAGGCATTATCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTACAGGGCTGTTATTTCCCACCCAAGTTAGAGCCTGAACATGAAAGTCGCCTTAAAATGCTTAAGCTTTTGTGA 714 0.416 MCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVVAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGVAYGFLAATMGIQRIWQRHYHILTKRELTKEYIVEDLQGCYFPPKLEPEHESRLKMLKLL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03878 237 ProSiteProfiles Zinc finger RING-CH-type profile. 1 39 IPR011016 GO:0008270
Tsu04g03878 237 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 237 - -
Tsu04g03878 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 46 IPR013083 -
Tsu04g03878 237 SUPERFAMILY RING/U-box 2 37 - -
Tsu04g03878 237 SMART ringv_2 1 33 IPR011016 GO:0008270
Tsu04g03878 237 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03878 Tsu-Chr4 47676805 47681297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03878 1 237 C3H Transcription Factor Family AT1G11020 88.285 2.65e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03878 - - gmx:100818950 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03878 04 47676805 47681297 Tsu04g03878 04 47676805 47681297 ECH