Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03874 atgatgaAATTGTTACCGttcaccacaaaaaaaaaatcagaacttTGGTCTACCATTTTTGATGGAAAGTATCCCCATGCGTGGTCCCAGAGTAAGGTTTCTCCATGTGGTGAAATACACATGGCAGCTATTCCTAgcagtagtagtagtaataataataagaatgatgatgatgagaactCAACAAAGGAACCCCACGGTATAGAGGGAAAGCCATTTGATGCTGATGAGAACAATATTTTTCTAGGAATCTATGATGGCAATGGAAGTGGCAGAGCATCTCGGCACGTCAAAGATCGTCTTCTTTATGAACTATCAaGACTGGTAGCACAGAATGATAATCACATGTCTGAAGATATTATCAAGCGTGCTTTCTCTTCTGTGGAGAATACATTTATGGAGTATGTTAAGAATATTTaccaaaacaatcaaattcCTATTGAAGACGGTTCTTGTTGTATTGCTTCAATCATTTGGGGACGTACGTTGTATATTGCAAACCTTGGTGATTCTCGTGCGGTACTAGTTTCGAAGGTGGATAAAACACTCCATATTGATCAGTTAACTAACGATCACAGTGTTAGTAACGAATATATTAGAGAAGAACTCAGGGCACGGAATCCATATGATTCTGAAGTTGTTCAGTACAGTGAGGGAATATGGAATAATAGCAACATAAAGGTAAATAGAAGCATTGGTTATGCTCATTTTAAGGACCATCCGATCAATTATTTGCGAAGGTTACCAGAAATTCAACAGAATCAACGGATAACTCAAGTTTTAGTATCTGCAGAACCTGAATTACATTCAAGAAAAATTAGAAAGGGTGATACGTTTCTCATACTTGCATCTCATGGCTTTTGGAATTTCATGACAAATAAGAATGCAGCTAATATTGTAAACCGCAAACCCCGAGATGAAATTGCAAAAAGACTTTTGAGTGCTGCTCTAGAAAAGGCAACTGAGGAAAGAGGAGCAAACAGTGTTTATGATGATATGATTATCATTGTTTTATTCTTCAGCGAAGTGTTGTCACAGAGGGAAGACACACCACAGACGGTAGTGTTACATCAAGGGCCGTCATATTTGAgtaatATAATCATGGCATCAGGAAAATCCGACCAATCTCGTCAGAGTCTCACTTCATCTAGTGTGCCTACACATTCTCAAAGGGTAATCGGAAAAGAATGGGACATTTGCTTAAGATCCTCCGAATTTAGAAGCGACATCCATCAAAGTGGGCAGTCCGACTTGATGGAGATTATGAAAATGATGCAGGAGATGCAACGTGTGAAGATTGTACAACAACAATCTCTGTCCGCAATTCAAGTGCTAGAGATAATTGGGAAAAGTGTAAAATTTGGGGGAGACAGAAATTTGCGCCTAGAAATGGAGAAGAGTATATTTGGTGACCCAGTTACAGAGTATATTTCCGGAGGTCTAATGATTGAAGTTGCCAAGCAGGATAAATTAAGGCCCCCTTGTATGCATTTTTATGTCAGgtaCTTGCATGAGAAAATCATCTGCCCACAAAAATTGTGTAATAAGTTCTCTTTCTTAAACCCAAATACAATAAGTAAATTTGCGCGAATGATTTATCAAGAACTTACTGAAAAGGAAAAGGACACTACAGTAACTGTATTCTTGGAAAGTCAGAAATTCAAGGATAAGTTGATATTTGCACCTTGCgatttaagGTCACATTGGGTGTTGATGGTCATCAATGTCAATGCGGGCACAATATCTTACTTAGATCCGGTGGCTAGGAAACCTACAATTGACCACAAACTGGTTGCAAATTTTCAGAAaattTTTGAAAGGTATCACAAAGATAAAATCATCAATTGGATAAATCCAGAGtgTCCTAAACAATCTAATCCTAAAGATTCTGGATATTATGTCATGAAATTAATGAAAGATATCATCACAGGTCCAGAAGAGATCCCTGTAGATtaTTTGAAGTATTTGCCCGATACCTACTCAAATGATGACTTAGATGAGGTCAAGACGGATTGGGCTAGCTATATGATCAATACTATTAACACAACAACAGACACAACAACAGTGTGA 2070 0.3614 MMKLLPFTTKKKSELWSTIFDGKYPHAWSQSKVSPCGEIHMAAIPSSSSSNNNKNDDDENSTKEPHGIEGKPFDADENNIFLGIYDGNGSGRASRHVKDRLLYELSRLVAQNDNHMSEDIIKRAFSSVENTFMEYVKNIYQNNQIPIEDGSCCIASIIWGRTLYIANLGDSRAVLVSKVDKTLHIDQLTNDHSVSNEYIREELRARNPYDSEVVQYSEGIWNNSNIKVNRSIGYAHFKDHPINYLRRLPEIQQNQRITQVLVSAEPELHSRKIRKGDTFLILASHGFWNFMTNKNAANIVNRKPRDEIAKRLLSAALEKATEERGANSVYDDMIIIVLFFSEVLSQREDTPQTVVLHQGPSYLSNIIMASGKSDQSRQSLTSSSVPTHSQRVIGKEWDICLRSSEFRSDIHQSGQSDLMEIMKMMQEMQRVKIVQQQSLSAIQVLEIIGKSVKFGGDRNLRLEMEKSIFGDPVTEYISGGLMIEVAKQDKLRPPCMHFYVRYLHEKIICPQKLCNKFSFLNPNTISKFARMIYQELTEKEKDTTVTVFLESQKFKDKLIFAPCDLRSHWVLMVINVNAGTISYLDPVARKPTIDHKLVANFQKIFERYHKDKIINWINPECPKQSNPKDSGYYVMKLMKDIITGPEEIPVDYLKYLPDTYSNDDLDEVKTDWASYMINTINTTTDTTTV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03874 689 MobiDBLite consensus disorder prediction 42 74 - -
Tsu04g03874 689 SMART PP2C_4 10 338 IPR001932 -
Tsu04g03874 689 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 79 355 - -
Tsu04g03874 689 Pfam Protein phosphatase 2C 74 323 IPR001932 -
Tsu04g03874 689 Gene3D - 30 342 IPR036457 -
Tsu04g03874 689 SUPERFAMILY Cysteine proteinases 487 678 IPR038765 -
Tsu04g03874 689 Gene3D Adenoviral Proteinase; Chain A 477 679 - -
Tsu04g03874 689 MobiDBLite consensus disorder prediction 56 73 - -
Tsu04g03874 689 CDD PP2Cc 71 340 IPR001932 -
Tsu04g03874 689 ProSiteProfiles PPM-type phosphatase domain profile. 65 340 IPR001932 -
Tsu04g03874 689 ProSiteProfiles Ubiquitin-like protease family profile. 475 641 IPR003653 GO:0006508|GO:0008234
Tsu04g03874 689 Pfam Ulp1 protease family, C-terminal catalytic domain 492 673 IPR003653 GO:0006508|GO:0008234
Tsu04g03874 689 SUPERFAMILY PP2C-like 75 341 IPR036457 -
Tsu04g03874 689 PANTHER ALPHABET, ISOFORM E-RELATED 79 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03874 Tsu-Chr4 47631159 47635956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03874 80 333 PP2C-type Phosphatase Gene Family AT5G06750 37.931 5.72e-50 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03874 K01102 - gmx:100806476 196.052