Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03859 ATGGAGGAACAAGATAAACTTCAAGAAACTGGACTTGAATCTCAACTTGCTTCATGTTTTTCTTCCTCTTgcaaaagtcttctgtttccTTCTAGACCTGGCTATGGAAAACTTGGGACAAAGTGTCTTGTTAAAGCTAATTACTTCCTTGCAGATATATCAGTATCTGATTTGAGCCATTACCATGTTATTATAACTCCTGAAGTAGtttttcgaaaaaaaagaaaagctaTCATAGTAGAGTTAGTGAGGCTTTATCAGAACACTGAGTTGGGAAAGAGGCTTCCTGTTTATGATGGTCGAAATAATCTTTACACTGCCGGTTCGCTTCCTTTTACACACAAAGTGTTCAATATAGTATTATTGAATGAGGATGATGAAGGTGCTAGTAGTACAAGGGTAAGagaatttgaagttgaaatCAAGTTTGTAGCTCATGTTAGTATGCATAAGTTACATGAGCTTCTAAGTGGAAAAAAAGTGGATACTCCAGAAGAAGCTCTTAATGTCATTGACATTGTATTGAAGGAGCTTGCATCTCATAGCTATGTATCATTTGGGAGGTTACTCTATTCTCCGGATTTAAGAAAACCATATAATCTGAGTGGTGGCTTGGAATCGTGGCACGGTTTCTACCAAAGTATAAAGCCTACTCAGATGGGATTATCGCTTAACGTTGACTTGTCATCGTCGGCGTTTATAGAACCGCTCCCTGTGATTGACATTGTAGctcaaattttagaaaaagaTGTGTACTCAAAGCCAATTTCAGATGCAGATCGCGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTAGAAGTTACATATAGAGGAAGTTTTAGAAGGAAGTACAGGATAACAGGAGTAACATCACAGCCTACAAGGGAACTCTTTTTCCCTCTGGATGAGAATATGAACATGAAATCAGTAGTAGATTACTTTCAAGAAATGTATGGATATACAATCATGCATCCTCATTTACCTTGCATTCAAGTAGGAAGCGAAAAGAAGACTAACTATTTGCCTATGGAGGCATGTAAGATAGTTGAAGGTCAGAGATATACAAAAGGGCTTAATGATAAGCAGATAACTTCTTTGCTAAAAGTTTCATGTCAAAGGCCACGTGAAAGGGAGAAAGATATTCTACAGacaatacatcaaaatgattatGATTGTTATCCTTATGCAAAGGAGTTTGGTATCAGCGTAGATAACAAGCTTGCATTAGTCGAGGCTCGAGTTCTTCCAGCTCCATGGTTGAAATATCATGACACTGGAAGAGATACAAAAATCTTGCCACAATTTGGTCAGTGGAACATGGCGAACAAGAAAGTTATAAATGGAAGCAAAGTAAGATATTGGGCATGTATCAATTTCTcaagaaatgtccaacaaagaACAGCTAATGCATTTTGCCAACAGTTAGTTCAGGCGTGTCAAACTTTAGGCATGGAATTTAGTCAGGAACCTGTTATTCCTATATATTCAGCAAGACCAGATATGGTTAAGAAGGCCTTGAAGTATGTACATTCTACTTCTCTAAACAAACTTGATGGAAAAGAGCTAGAGTTTCTCATCGCAATTCTTCCGGACAACAATGGCTCTCTCTATGGTGATCTCAAAAAAATCTGCGAAACGGATTTAGGGCTGATTTCTCAATGCTGTCTTACAAAATATGTATTCAAGAttaatagattttatttatcaaatgtAGCACTGAAGATCAATGTCAAGatgGGAGGAAGGAACACAGTACTTTTGGATGCTATAAGTTGTAGGATTCCATTGGTTAGCGACATTCCAACAATAATTTTTGGAGCTGATGTAAGTCATCCAGAAGTCGGAGAGGATGTTTGTCCATCCCTTGCAGCCGTTGTAGCCTCCCAAGACTGGCCAGAAGTGACAAAGTATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTTATTCACGATCTTTTCAAATGTCGGAACGATCCTCATCACGGTATCGTTTATGGTGGCATGATCAGAGAACTCTTACTCTCATTTCAGAAGGCAACTGGAAAAAAACCACTTAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATTTGAGCTTGATGCGATCCGCAAGGCGTGTGCATCTTTGGAACCTGGTTACCAACCTCCGGTTACATTTGTCGTTGTTCAAAAAGGGCATCACACTAGACTCTTCCCAAACAATCACAACGACAGAAACAGCACTGATAGGAGTGGGAATATCTTGCCAGGTACCGTGGTGGATTCGAAGATATGTCATCCTACCGAGTTCGACTTCTACTTGTGTAGTCACGCAGGAATTCAGGGTACAAGTAGACCGGCTCATTATCGTGTTATATGGGACGATAATAACTTCAGTGCCGATGAGATTCAGTCCTTAACTAACAACTTGTGCTACACTTATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGTTTACTATGCGCATCTGGCAGCTTACAGAGCTCGATTCTACATGGAACCCGATGTCCACGAAAATGTAAAATCACAAGTTACAAGATCGAAAATTGAGTCAGTTCGGCCATTGCCAGCTCTAAAAGAGAAGGTGAAGAAAGTAATGTTTTACTGCTGA 2649 0.3809 MEEQDKLQETGLESQLASCFSSSCKSLLFPSRPGYGKLGTKCLVKANYFLADISVSDLSHYHVIITPEVVFRKKRKAIIVELVRLYQNTELGKRLPVYDGRNNLYTAGSLPFTHKVFNIVLLNEDDEGASSTRVREFEVEIKFVAHVSMHKLHELLSGKKVDTPEEALNVIDIVLKELASHSYVSFGRLLYSPDLRKPYNLSGGLESWHGFYQSIKPTQMGLSLNVDLSSSAFIEPLPVIDIVAQILEKDVYSKPISDADRVKIKKALRGVKVEVTYRGSFRRKYRITGVTSQPTRELFFPLDENMNMKSVVDYFQEMYGYTIMHPHLPCIQVGSEKKTNYLPMEACKIVEGQRYTKGLNDKQITSLLKVSCQRPREREKDILQTIHQNDYDCYPYAKEFGISVDNKLALVEARVLPAPWLKYHDTGRDTKILPQFGQWNMANKKVINGSKVRYWACINFSRNVQQRTANAFCQQLVQACQTLGMEFSQEPVIPIYSARPDMVKKALKYVHSTSLNKLDGKELEFLIAILPDNNGSLYGDLKKICETDLGLISQCCLTKYVFKINRFYLSNVALKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVSHPEVGEDVCPSLAAVVASQDWPEVTKYAGLVCAQPHREELIHDLFKCRNDPHHGIVYGGMIRELLLSFQKATGKKPLRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPGYQPPVTFVVVQKGHHTRLFPNNHNDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYRVIWDDNNFSADEIQSLTNNLCYTYARCTRSVSVVPPVYYAHLAAYRARFYMEPDVHENVKSQVTRSKIESVRPLPALKEKVKKVMFYC 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03859 882 Pfam Argonaute linker 1 domain 187 234 IPR014811 -
Tsu04g03859 882 SMART Piwi_a_2 525 846 IPR003165 GO:0003676
Tsu04g03859 882 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 17 881 - -
Tsu04g03859 882 CDD PAZ_argonaute_like 236 350 - -
Tsu04g03859 882 ProSiteProfiles PAZ domain profile. 237 351 IPR003100 GO:0005515
Tsu04g03859 882 SUPERFAMILY Ribonuclease H-like 516 847 IPR012337 -
Tsu04g03859 882 Pfam Piwi domain 526 845 IPR003165 GO:0003676
Tsu04g03859 882 SUPERFAMILY PAZ domain 231 391 IPR036085 GO:0005515
Tsu04g03859 882 Pfam Argonaute linker 2 domain 377 423 IPR032472 -
Tsu04g03859 882 ProSiteProfiles Piwi domain profile. 525 846 IPR003165 GO:0003676
Tsu04g03859 882 CDD Piwi_ago-like 395 845 IPR045246 -
Tsu04g03859 882 Gene3D - 415 588 - -
Tsu04g03859 882 Gene3D paz domain 231 355 - -
Tsu04g03859 882 Pfam N-terminal domain of argonaute 41 175 IPR032474 -
Tsu04g03859 882 Gene3D - 594 882 IPR036397 GO:0003676
Tsu04g03859 882 Pfam Mid domain of argonaute 434 511 IPR032473 -
Tsu04g03859 882 SMART DUF1785_2 184 236 IPR014811 -
Tsu04g03859 882 Pfam PAZ domain 260 367 IPR003100 GO:0005515
Tsu04g03859 882 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Tsu04g03859 882 PANTHER PROTEIN ARGONAUTE 10 17 881 - -
Tsu04g03859 882 SMART PAZ_2_a_3 241 373 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03859 Tsu-Chr4 47519563 47524897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03859 29 882 Eukaryotic Initiation Factors Gene Family AT5G43810 70.732 0.0 1309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03859 K11593 - gmx:100808457 1475.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03859 04 47519563 47524897 Tsu04g03859 04 47519563 47524897 ECH