Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03858 ATGACATTGGACGACGATAGTTCCATATATGTTGGAGGTCTCCCTTACGATGCCTCCGAAGATGCAATTCGCACTGTCTTCAATTTGTATGGTGCTATCCTTGATGTCAAGaTTATCAATGACCAACGTACAATAGGAAAATGCTATTGTTTTGTTACTTTTACAAACCCTAGGTCAGCAGTTGATGCTATCAACGACATGAATGGAAGAACTATTGGTGGACGTGTGGTTAAAGTTAATGGGGTGAAGAGTCGTGGCGGCAGCGGTGGCGGCAGATTGAATTTCGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGTGATTGGGATCGTGGTGGCAGAGATCGAGATGTTCGAGACCAAGATTATGACCGAGGCAGAGTTCGAGACGAAGATTATGATCATGGTAATATGAAAGATGGATACAGGAATAGAGGCAGTGATTGGACTCGGCTTCGTGATAGGTCCCGAGACCATGTCAGGGATAGGGATAGAAGAGTTGAGCATATGCAAGATTATGATTATGATGATCAAGCTAGAGAAAGCATGTTAGATGATGATTGGAATCGTGACGATGATAGGGCTGAATATGAACAAGAAAACAGCAGGGTTCATGGTGGTGATGTGAATAAAGATCATACCTTAGATGTGGATACAGACAGTAAGCTGGATAGGATTAGTGATCCTGATAAAAGTTTTGATGAACATAAAAAAGAACAGTCAAGGAGAAACATCGAACTGATTGTGGCACATTTTTATCTTGTTCTTACTTGCTTTTGTGGTCTTCAGCTAGAAGATGAATTTGAGAGGTCAATGCAGAGGCTTGATCAACTAAAAAAGGAGGTTTCTAAGATGGAAGAGGGATTGGAAGAGAGAAGAATTAATGTTATGGAGTTACAAAAGCACTCTAAGAAACTGGAGGATGCAGTGATTAATGCAAAGAAACAATCTTTATATCGCCAGATGCAGTTGACCAAGCTGCATGAATGTTTTCTGCAAGTGCAAGAATCCACAGAAAGACTTAAAACTAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCAGTAATGTTCGAGAGTGATGGTGATGGCGATGGTGGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAGATAG 1149 0.4064 MTLDDDSSIYVGGLPYDASEDAIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAVDAINDMNGRTIGGRVVKVNGVKSRGGSGGGRLNFGRERERYYHHNDERNGDWDRGGRDRDVRDQDYDRGRVRDEDYDHGNMKDGYRNRGSDWTRLRDRSRDHVRDRDRRVEHMQDYDYDDQARESMLDDDWNRDDDRAEYEQENSRVHGGDVNKDHTLDVDTDSKLDRISDPDKSFDEHKKEQSRRNIELIVAHFYLVLTCFCGLQLEDEFERSMQRLDQLKKEVSKMEEGLEERRINVMELQKHSKKLEDAVINAKKQSLYRQMQLTKLHECFLQVQESTERLKTSEKEFQALVDSVMFESDGDGDGGLGQLTNGSLDGR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03858 382 Coils Coil 265 320 - -
Tsu04g03858 382 MobiDBLite consensus disorder prediction 362 382 - -
Tsu04g03858 382 MobiDBLite consensus disorder prediction 107 153 - -
Tsu04g03858 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Tsu04g03858 382 CDD RRM_SF 9 80 - -
Tsu04g03858 382 SMART rrm1_1 8 80 IPR000504 GO:0003723
Tsu04g03858 382 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 378 - -
Tsu04g03858 382 Gene3D - 2 100 IPR012677 -
Tsu04g03858 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Tsu04g03858 382 MobiDBLite consensus disorder prediction 200 243 - -
Tsu04g03858 382 SUPERFAMILY RNA-binding domain, RBD 4 106 IPR035979 GO:0003676
Tsu04g03858 382 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03858 Tsu-Chr4 47498994 47503477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03858 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 2.11e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03858 - - mtr:MTR_4g113150 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03858 04 47498994 47503477 Tsu04g03858 04 47498994 47503477 ECH