Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03857 atggCTTCACCATCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTACTCAAATCAGTTGGAGAACAAACTGATCAAAGCTACAAACTCGAAGAGTTTCTTTCTCGCTTAGAAGAAGAACGTCTCAAAATCGATGCTTTCAAGCGCGAACTTCCACTCTGCATGCAACTTCTCACAAATGCTATGGAAGCATCAAAGCAACAACTTCAAGCTTGTAGAGTGAATCAAGGAAATACAACAAAGCCAATTCTAGAAGAGTTCATACCAGTGAAGCAATTAATAACTTCATCAGAAACTATGGAAAACACAACAAATAATAATGTATGTGATAAGGCAAATTGGATGACAAGTGCACAACTATGGAGTCAAACAAGTGAAGgaacacaacaacaaaattcaacaaaagaaattactgaaaataataacaataataataatattggaTTTAACATTAGTCCTAAACATAGAAATGGTGGAGCTTTTTTACCATtctcaaaagaaagaaataataataactctTCTTGTGTTCCTGAACTGGCACTTGCTTCACCTCAGAAagagattgttgatgataagaAACATGTTGGAGAAGGagagaaaagagaaaacaatgaagaaaaagagagtCCAATAGCATCATCACATGcacaaacaacaaacaacaatacAAATCAAACTCATAGGAAAGCAAGAAGATGTTGGTCACCTGATTTGCATAGAAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGtggCAACACCAAAACAGATAAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTACAGAAATATAGGCTACACACAAGAAGACCAAGTCCAAGTTCCCAAAATGGTGCACCAGCAGCACAACTAGTTGTTTTAGGAGGAATATGGGTCCCACCAGAATATGCAACTGCAGCACATACAGGAGTAGGAACCCCTACTCTTTATGGTGCACATCCTACTTCTCATCATCTTACTTTGCCACACTATTGCACTGCTCCTGGACAGGAGCAGTATTATACTACTGCGCCGCCGCCGCAGCATCAGCAACTACTTCCGCCGCCTCACCATATGCACCATGTATACAAGACTACGCCGCATGGTCAAGGTTCGCCTGAGACGGGTGGAGATGGGTTGGAGAGTATCGAGAATGGGAAGTCGGAGAGTAGTAGCTGGAAAGATGGGAGTTCTGAGGAGAATGAAGGGGAGAGGAAAGGGTTTGTTGAAGAGAGCAATGGGAGTGACATCACTCTTAAATTTTAA 1305 0.3678 MASPSELGLDCKPHSYSMLLKSVGEQTDQSYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQACRVNQGNTTKPILEEFIPVKQLITSSETMENTTNNNVCDKANWMTSAQLWSQTSEGTQQQNSTKEITENNNNNNNIGFNISPKHRNGGAFLPFSKERNNNNSSCVPELALASPQKEIVDDKKHVGEGEKRENNEEKESPIASSHAQTTNNNTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSSQNGAPAAQLVVLGGIWVPPEYATAAHTGVGTPTLYGAHPTSHHLTLPHYCTAPGQEQYYTTAPPPQHQQLLPPPHHMHHVYKTTPHGQGSPETGGDGLESIENGKSESSSWKDGSSEENEGERKGFVEESNGSDITLKF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03857 434 Coils Coil 33 53 - -
Tsu04g03857 434 MobiDBLite consensus disorder prediction 352 434 - -
Tsu04g03857 434 Gene3D - 231 289 - -
Tsu04g03857 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 434 IPR044787 GO:0003700|GO:0006355
Tsu04g03857 434 MobiDBLite consensus disorder prediction 125 236 - -
Tsu04g03857 434 MobiDBLite consensus disorder prediction 125 155 - -
Tsu04g03857 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 289 IPR017930 -
Tsu04g03857 434 MobiDBLite consensus disorder prediction 188 212 - -
Tsu04g03857 434 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 232 287 IPR006447 GO:0003677
Tsu04g03857 434 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 434 - -
Tsu04g03857 434 Pfam Myb-like DNA-binding domain 234 285 IPR001005 -
Tsu04g03857 434 MobiDBLite consensus disorder prediction 406 424 - -
Tsu04g03857 434 MobiDBLite consensus disorder prediction 213 232 - -
Tsu04g03857 434 SUPERFAMILY Homeodomain-like 229 290 IPR009057 -
Tsu04g03857 434 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03857 Tsu-Chr4 47494822 47497272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03857 1 434 G2-like Transcription Factor Family AT2G03500 49.787 8.24e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu04g03857 Myb_DNA-binding 9.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03857 - - gmx:100807925 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03857 04 47494822 47497272 Tsu04g03857 04 47494822 47497272 ECH