Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03856 ATGTCTttccttattttcatttttttattttcactgaGTTTCCATTCCCGAGTTATTAACTCGGAACCAACTCAAGACAAGCAAGCTCTCCTTGCTTTCATTTCACaaacaccacactctaaccgtCTTCAATGGAACTCATCCGATTCCGTTTGTAACTGGGTTGGTATTCAATGTGATGATTCTAAATCATATGTTTATTCTCTCCGTTTACCTGCCGTTGATCTTGTCGGTAAAGTTCCACCCAATACAATCGGACGGTTAACAAATCTCCGTGTTCTTAGTCTTCGTTCTAATGCTCTTTCCGGTGAGATCCCTTCTGATTTTTCTAATTTGACTTTTCTTCGTAGTATTTATCTTCAGAGAAATAAATTCTCCGGTGAGTTTCCGTCTAGTTTAACTCGTTTGACTCGTTTGACTCGGTTGGATCTCTCTTCTAATAACTTCACTGGTTCAATTCCTTTCTCTATCAACAATTTGACTCATCTTACTGGTTTGTTCTTAGAGAACAACACGTTCTCCGGTAGTCTTCCGAGTATCACTGCAAATTTGAACGGTTTCGATGTTTCTAATAACAATCTCAACGGTTCAATTCCTAAAACACTCTCGAATTTCCCTGAATCTTCGTTCGCCGGAAACTTAGATCTCTGTGGTCCACCGTTGAAATCATGCACACCGTTTTTTCCGGCACCGGCTCCGTCGCCGGATTCAATTCCACCGGCTGATAAACCAAAGCACAAATCAAAGAAACTCTCTACCGGCGCCATTGTCGCAATCGTAGTTGGTTCTATTCTATTCATAGCTTTATTGCTACTACTACTGTTACTCTGTCTCCGGAAACGCCGTCGCCGGACACCAGCAAAACCACCAAAGCCAGTAGTTACAGCAGCTCGTTCTGTTCCAGCAGAAGCCGGAACATCGTCTTCGAAAGACGATATAACCGGCGGTTCAGCTGAAGCGGAGAGGGAGAGGAACAAATTGGTCTTCTTCGACGGAGGAATATATAGTTTCGATTTGGAGGATTTGCTTAGAGCTTCAGCGGAGGTTTTGGGTAAGGGTAGTGTTGGAACTTCATATAAAGCGGTTTTGGAAGAAGGAACTACGGTGGTTGTTAAAAGGTTGAAAGATGTTGTTGTTacgaagaaagaatttgagatgCAAATGGAAATTTTGGGTAAAATTAAGCATGAAAATGTTGTTCCTCTTAGAGCTTTTTACTTCTCTAAAGATGAGAAATTGCTTGTTTATGATTACATGCCAGCCGGTAGCTTATCTGCGTTGCTTCACGggaGCAGAGGATCTGGTCGAACGCCGTTAGATTGGGACAACCGGATGAGAATAGCCCTCGGAGCATCAAGAGGACTAGCATGCCTCCATGTGTCGGGCAAAGTAATCCATGGCAACATCAAATCCTCCAACATTCTCCTTAAAGGACCTGATCACGACGCAAGTGTTTCGGACTTTGGCCTCAACCCATTATTCGGAAATGGATCCCCATCAAACCGTGTTGCAGGTTACCGTGCACCAGAAACCTTAGAAACTCGAAAAGTCACCTTCAAATCCGACGTGTACAGCTTTGGAGTCTTGCTATTGGAGCTATTAACAGGAAAAGCACCTAATCAAGCTTCACTTGGAGAAGAAGGAATCGATCTACCAAGGTGGGTCCAATCCGTTGTTCGCGAAGAATGGACCGCCGAAGTTTTTGACGCCGAATTGATGAGGTTTCATAAtattgaagaagaaatggtTCAATTGTTACAGATTGCGATGGCTTGTGTTTCTGTGGTCCCTGATCAAAGACCAAGTATGCAAGATGTGGTACGCATGATTGAGGATATGCATCGCGGTGAAACCGACGACGGTCTCCGACAGTCGTCGGATGATCCTTCAAAAGGATCCGAGGGTCATACTCCACCTCCCGAATCAAGGACTCCACCTAGATCACGCACACCGTAG 1956 0.4238 MSFLIFIFLFSLSFHSRVINSEPTQDKQALLAFISQTPHSNRLQWNSSDSVCNWVGIQCDDSKSYVYSLRLPAVDLVGKVPPNTIGRLTNLRVLSLRSNALSGEIPSDFSNLTFLRSIYLQRNKFSGEFPSSLTRLTRLTRLDLSSNNFTGSIPFSINNLTHLTGLFLENNTFSGSLPSITANLNGFDVSNNNLNGSIPKTLSNFPESSFAGNLDLCGPPLKSCTPFFPAPAPSPDSIPPADKPKHKSKKLSTGAIVAIVVGSILFIALLLLLLLLCLRKRRRRTPAKPPKPVVTAARSVPAEAGTSSSKDDITGGSAEAERERNKLVFFDGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYMPAGSLSALLHGSRGSGRTPLDWDNRMRIALGASRGLACLHVSGKVIHGNIKSSNILLKGPDHDASVSDFGLNPLFGNGSPSNRVAGYRAPETLETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPSMQDVVRMIEDMHRGETDDGLRQSSDDPSKGSEGHTPPPESRTPPRSRTP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03856 651 MobiDBLite consensus disorder prediction 612 651 - -
Tsu04g03856 651 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Tsu04g03856 651 PANTHER OS05G0588300 PROTEIN 7 631 - -
Tsu04g03856 651 MobiDBLite consensus disorder prediction 612 630 - -
Tsu04g03856 651 Gene3D Ribonuclease Inhibitor 184 224 IPR032675 -
Tsu04g03856 651 MobiDBLite consensus disorder prediction 285 319 - -
Tsu04g03856 651 Gene3D Transferase(Phosphotransferase) domain 1 419 631 - -
Tsu04g03856 651 SUPERFAMILY Protein kinase-like (PK-like) 348 610 IPR011009 -
Tsu04g03856 651 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Tsu04g03856 651 ProSiteProfiles Protein kinase domain profile. 344 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03856 651 Gene3D Phosphorylase Kinase; domain 1 313 418 - -
Tsu04g03856 651 Pfam Leucine rich repeat 75 125 IPR001611 GO:0005515
Tsu04g03856 651 Pfam Protein kinase domain 347 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03856 651 SUPERFAMILY L domain-like 25 210 - -
Tsu04g03856 651 PANTHER OS05G0480400 PROTEIN 7 631 - -
Tsu04g03856 651 CDD STKc_IRAK 350 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03856 Tsu-Chr4 47473940 47477719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03856 1 631 Receptor kinase-like Gene Family AT5G58300 53.738 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu04g03856 Pkinase 4.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03856 - - gmx:100806857 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03856 04 47473940 47477719 Tsu04g03856 04 47473940 47477719 ECH