Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03854 ATGTCTGAGTCACAATGTGATCAAACTCACAAAATGTTAGATGCTTATATCTATGATTATCTGATGAAGAAACAATTCTATGAAACAGCGAAAGCATTTCATGAAGAAGCCGCGGTGGAAACTGAAATTTTTATAGATGCACCTGGTGGCTTTCTCTATGAGTGGTGGACTGTTTTCTGGGAATTGTTTATGGCCAAACAAGGTCTTTCAAACTCAGAACCGGCTTTATCGTACCTTCAGGCTCAAGAGATGCGGAACCAAGAAGAGCTGGAGAGTATGCAGTTCGCATCACAGAGCCCTGCTCAGCAGCAGCAATATGGAGCTGAAACTCAAGTTCTTAATGGCAATGTTCTCTGTCCCATGAACTATGGTCCTTTGGCGAGGTCTCCCCTCCATGGAAATGGTTTAGAGGACACGGCCATTGAGATAATGAAATCTTATATCCGTGGTGGGCATCCAATCGAGGATTGTGCCTTTCTATGGAACGCAACAGCAGCATTAACTGGTGGACATGCTTCAGGACAAACATTTCCCAGTGCACCTAGCATTTTACAAGGGAATCTTCAACagcttcaaaatcagaaccGGCTACTTCTAGGGTCTACACAATGCATGAGCAGTGATATGAGTGCAATGATGAGGTCTCGAGCTGTTGTTTCAGAAGGATCCTTATTCGGTGTTCATGGTTCAAATCAAGGTGGCAGCAGCGATTTGACTCTGAAAGGGCGGCCTTTAACAGGACTGGAACAGCTTCATGCAGAAATTCTCCAGAAGCATAATTTGAGCATGTCTTCTCAGTATTCCAATCAAGTTTCATCAAGGCAGCAGCTTATGCTTCAGGCACAACAGAATTTACTCAATCCATCTGCTAGTAGTTTTGATAGCAAAAGACCAAGGATGCTTCTTAATAATCAAACTATGGTTCCTGGGAAAGATGGCCAATCAAATTCAGTAGGTGGTTCCATTCCCAATATTGGAACACCTTCACAAATTGATTTCCCTGAATTGTTGCCATATATGGACATGGATACACTCCTTAAGGTATCAACCACAGCCCTATATCTAAATTGTGGGCGAAAGCAAAAACGAAAAGTAGGATTGTATTCAGGTCCTGGCAATAGCTCTGGAACTGCAAACACAGTGGGGCCATCTTCTGGTTCACCTTCTGCACCATCTATGCAGACACCACTGCCAACTCCGCAACAGAATGATTTGGGATCACTTGCATCAACACAGAATCAATTGGCTGATATGGACCATCTCAAGAGTGATGGATCTTTGGGTAAAAATTTTGAGTCATTTTCATCTCTTGCTGATAAAGACCATAAAGGACGAGTTGGAATAGGATTCTCATTGAAGGAGATCAAACATGGACTTGCTAGTTCACATAAAGTTTACTGTTGTCACTTCTCCTCAGATGGAAAACTGCTTGTTACTGGTGGTCATGACAAAAAGGCTTCTCTTTGGTGCACAAAATCGTTTAACCTGCAATCTACACTTGAAGAGCACACTCAACGGATAACCGATGTTAGATTTTGTCCAAGCATGTTCTGTGTTGCTACGTCCTCAACCGACAAAACTGTGAAGGTTTGGGATGTCAATAATCCTAGTCATTCTCTTCGGACATTTACCGGGAATGCAGCCGTGATGTCCATAGACTTTCACCCAAGTAAAGATGACCTTATTTGCTCTTGTGATAATAAAGAGATAAGATATTGGAGTATCAAAAAGGGTAGTTTAGTTGGGGTTTTAAAGGGTGGTGTAACTCTGGTGAGATTTCAACCTGGTTTGGGAAAACTTCTTGCAGCAGTAGTAAATAATCTAATACTCATCCTTGATGCAGAAACTCTGAGATGCAAATCTAAATTGCAGGGTCATGAGATCCCCGTTCATTCGTTGTGCTGGCACTCTTCTGGAGATTATCTGGCATCTGTCAGTGACGATATGGTTAAAATCTGGGCTGTTGGATCTGATAACAGCGGCGTATGTATTCAGTCATTGAATGCACAAGGGACCGATGACAAATTCAAGACCTGTGTTTTCCATCCCATCTGTTCTGTTTTGATCATTGGCTGCAATGAGTCGCTTATGCTGTGGAACTTTATCGATAGACAGAAAATGACTGTGCCTGCACATGACAATCTTGTATCTGCCTTGGCAGTCTCTGATGTTACCGGGTTGGTGGCTTCAGTCAGCCATGATAAGCATTTTAAGATCTGGAAGTGA 2226 0.4223 MSESQCDQTHKMLDAYIYDYLMKKQFYETAKAFHEEAAVETEIFIDAPGGFLYEWWTVFWELFMAKQGLSNSEPALSYLQAQEMRNQEELESMQFASQSPAQQQQYGAETQVLNGNVLCPMNYGPLARSPLHGNGLEDTAIEIMKSYIRGGHPIEDCAFLWNATAALTGGHASGQTFPSAPSILQGNLQQLQNQNRLLLGSTQCMSSDMSAMMRSRAVVSEGSLFGVHGSNQGGSSDLTLKGRPLTGLEQLHAEILQKHNLSMSSQYSNQVSSRQQLMLQAQQNLLNPSASSFDSKRPRMLLNNQTMVPGKDGQSNSVGGSIPNIGTPSQIDFPELLPYMDMDTLLKVSTTALYLNCGRKQKRKVGLYSGPGNSSGTANTVGPSSGSPSAPSMQTPLPTPQQNDLGSLASTQNQLADMDHLKSDGSLGKNFESFSSLADKDHKGRVGIGFSLKEIKHGLASSHKVYCCHFSSDGKLLVTGGHDKKASLWCTKSFNLQSTLEEHTQRITDVRFCPSMFCVATSSTDKTVKVWDVNNPSHSLRTFTGNAAVMSIDFHPSKDDLICSCDNKEIRYWSIKKGSLVGVLKGGVTLVRFQPGLGKLLAAVVNNLILILDAETLRCKSKLQGHEIPVHSLCWHSSGDYLASVSDDMVKIWAVGSDNSGVCIQSLNAQGTDDKFKTCVFHPICSVLIIGCNESLMLWNFIDRQKMTVPAHDNLVSALAVSDVTGLVASVSHDKHFKIWK 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03854 741 MobiDBLite consensus disorder prediction 364 406 - -
Tsu04g03854 741 SMART WD40_4 702 741 IPR001680 GO:0005515
Tsu04g03854 741 SMART WD40_4 616 654 IPR001680 GO:0005515
Tsu04g03854 741 SMART WD40_4 660 700 IPR001680 GO:0005515
Tsu04g03854 741 SMART WD40_4 577 613 IPR001680 GO:0005515
Tsu04g03854 741 SMART WD40_4 536 574 IPR001680 GO:0005515
Tsu04g03854 741 SMART WD40_4 493 532 IPR001680 GO:0005515
Tsu04g03854 741 SMART WD40_4 451 490 IPR001680 GO:0005515
Tsu04g03854 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 741 IPR001680 GO:0005515
Tsu04g03854 741 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Tsu04g03854 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 741 - -
Tsu04g03854 741 Gene3D - 449 585 IPR015943 GO:0005515
Tsu04g03854 741 Gene3D - 586 741 IPR015943 GO:0005515
Tsu04g03854 741 SMART Lish 9 41 IPR006594 GO:0005515
Tsu04g03854 741 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 357 741 IPR044716 GO:0003714
Tsu04g03854 741 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 7 349 IPR044716 GO:0003714
Tsu04g03854 741 MobiDBLite consensus disorder prediction 368 406 - -
Tsu04g03854 741 SUPERFAMILY WD40 repeat-like 451 741 IPR036322 GO:0005515
Tsu04g03854 741 CDD WD40 462 741 - -
Tsu04g03854 741 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Tsu04g03854 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Tsu04g03854 741 PANTHER LISH-SSDP-WD40 357 741 - -
Tsu04g03854 741 PANTHER LISH-SSDP-WD40 7 349 - -
Tsu04g03854 741 Pfam WD domain, G-beta repeat 495 532 IPR001680 GO:0005515
Tsu04g03854 741 Pfam WD domain, G-beta repeat 708 741 IPR001680 GO:0005515
Tsu04g03854 741 Pfam WD domain, G-beta repeat 540 574 IPR001680 GO:0005515
Tsu04g03854 741 Pfam WD domain, G-beta repeat 462 489 IPR001680 GO:0005515
Tsu04g03854 741 Pfam WD domain, G-beta repeat 618 653 IPR001680 GO:0005515
Tsu04g03854 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Tsu04g03854 741 Pfam LisH 11 37 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03854 Tsu-Chr4 47445697 47452618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03854 454 701 Miscellaneous Gene Families AT5G08390 26.275 3.81e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tsu04g03854 WD40 7.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03854 - - mtr:MTR_4g113080 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03854 04 47445697 47452618 Tsu04g03854 04 47445697 47452618 ECH