Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03852 ATGTCATCGAAAAGCAAAATCCGTGAACTCGAGGGGATGAAAAATGAAACAGGTAGCATATCAAGTTGGGGTGACGAGAGCAAGCACCGTCTCTATTGCGCAAACTCACACCTTGCGCTTGTGGATGACGTCCAACACCTTAATGCTCATCTGCATCAAGATCAAACCTCCACCGGCACCAGAGGTATTCAACTGGTACAATGGGAAACTCTACCACCTGAATTACTTTTGGACATAATCTGGCGGGTTGAAGAGAATAAGACATTTTGGCCTGCACGTGCTGCTGTTATCTATTGTGCTTCGGTATGTAAATCATGGAGGTCCGTAACGAAAGAGATTATCCAGAATCTTCAACAATCTGGAAAGATCACATTTCCAATTTCATTGAAGCAGTTCACTATATACGACACTCAACCTCCACAAGACGCTGCAGTTCAACCAAATCGTCGGTCAAGCGAGAGATTTAATTCTAAGAAGGTGTCACCAAGAAGTGTTCCAGCATATAACCATCTTGTTAGCACCATTTCCTATGAGTGGCTCACTAAAACACCAAGAGGAATGCACTGCGTCATGAACTCTATAGCTCTCTCGGCTATTCAGGAAGGGGGAAATTCTCCAACTCCAACATCATTACCTCAAATATTTGATGAACCCTTTTCTCCTTCACCAGCACTGAAGGCAAAAAGTCCAATGACAGATTCATATTCTACAAGCCGCCAATCAGAGCAACCAGGACTAAACCAAGGCGCAGTGGAGCCCTTGATACTAAAAAATAAGGCCGCCAGATGGGATAATCGGTGCAAGAGTTGGTGCTTAGAGTACATGGGTCGGACTATAGAGTCATCTGGAAGGAACTTTCAACTTGTAGCAGCTGTTGATCGTCTCATAATGTTTCGCTTGCGGAGCAAGAAAAGATAA 918 0.4412 MSSKSKIRELEGMKNETGSISSWGDESKHRLYCANSHLALVDDVQHLNAHLHQDQTSTGTRGIQLVQWETLPPELLLDIIWRVEENKTFWPARAAVIYCASVCKSWRSVTKEIIQNLQQSGKITFPISLKQFTIYDTQPPQDAAVQPNRRSSERFNSKKVSPRSVPAYNHLVSTISYEWLTKTPRGMHCVMNSIALSAIQEGGNSPTPTSLPQIFDEPFSPSPALKAKSPMTDSYSTSRQSEQPGLNQGAVEPLILKNKAARWDNRCKSWCLEYMGRTIESSGRNFQLVAAVDRLIMFRLRSKKR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03852 305 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 131 - -
Tsu04g03852 305 Pfam Tub family 121 290 IPR000007 -
Tsu04g03852 305 Gene3D Tubby Protein; Chain A 116 301 IPR025659 -
Tsu04g03852 305 SUPERFAMILY F-box domain 67 111 IPR036047 GO:0005515
Tsu04g03852 305 SUPERFAMILY Tubby C-terminal domain-like 121 294 IPR025659 -
Tsu04g03852 305 MobiDBLite consensus disorder prediction 139 160 - -
Tsu04g03852 305 MobiDBLite consensus disorder prediction 222 250 - -
Tsu04g03852 305 Gene3D - 63 115 - -
Tsu04g03852 305 PANTHER TUBBY-RELATED 1 131 - -
Tsu04g03852 305 PRINTS Tubby superfamily signature 274 290 IPR000007 -
Tsu04g03852 305 PRINTS Tubby superfamily signature 119 143 IPR000007 -
Tsu04g03852 305 PRINTS Tubby superfamily signature 256 273 IPR000007 -
Tsu04g03852 305 PANTHER TUBBY-RELATED 131 298 - -
Tsu04g03852 305 MobiDBLite consensus disorder prediction 227 247 - -
Tsu04g03852 305 PANTHER TUBBY-LIKE F-BOX PROTEIN 131 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03852 Tsu-Chr4 47421927 47423172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03852 131 293 TUB Transcription Factor Family AT2G18280 37.126 3.21e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu04g03852 Tub 3e-26 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03852 K19600 - gmx:100798958 199.519