Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03846 ATGTCATCATCAAGTGGAACAATTTGGAgctatgaagaagaaaaatcattTGAGAATGCAATAGCCATGCATtggaatgaaaaagaagaagaagattcaaATGAACAATGGGAAAAGATTGCTTCATGTGTCCCTAACAAAACCATGGAAGAAGTGAAACAACATTACCAATTATTGGTAGATGATGTTAGTGCAATTGAGGCAGGTCATGTATCATTTCCAAATTATGCTAATGAATTAGAAACTACTAATTCTTCAAATAAAGATTCTTCTAAGTCCTCCACAAGTTCAGATAAGAGATCATCAAGTTGTAATTTTGGAAGTGGGTTTTCTGGATTAGGACATGACTCTAATCACCATAGTAGTGGTAAAGGTGGATTGTCAAGGTCTTCGTCCGaacaagaaagaagaaaaggaatTCCATGGACAGAAGAAGAGCATAGgctATTTTTACTTGGTCTAGACAAATTTGGAAAAGGAGATTGGAGGAGTATATCAAGGAACTTTGTGATATCAAGGACACCAACACAAGTAGCAAGTCACGCACAAAAGTATTTCATAAGGTTGAATTCAATGAATAGAGATAGAAGAAGGTCTAGTATTCATGATATTACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACAGGTCAACATGGTAACACAATTCCATCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCAGCCTCATCATCATCCTGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGACATCTGCAGTTGGAACTCCTGTTATGCTtcctcatcatcatcctcatcatccaCCTTATGTTGTACCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATAA 918 0.3399 MSSSSGTIWSYEEEKSFENAIAMHWNEKEEEDSNEQWEKIASCVPNKTMEEVKQHYQLLVDDVSAIEAGHVSFPNYANELETTNSSNKDSSKSSTSSDKRSSSCNFGSGFSGLGHDSNHHSSGKGGLSRSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVQPHHHPGGLGMYGAPVGHPVVAPPAHMTSAVGTPVMLPHHHPHHPPYVVPLAYPMAPPTMHQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03846 305 MobiDBLite consensus disorder prediction 79 129 - -
Tsu04g03846 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 138 188 IPR006447 GO:0003677
Tsu04g03846 305 CDD SANT 141 186 IPR001005 -
Tsu04g03846 305 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Tsu04g03846 305 SUPERFAMILY Homeodomain-like 136 191 IPR009057 -
Tsu04g03846 305 SMART sant 5 62 IPR001005 -
Tsu04g03846 305 SMART sant 138 188 IPR001005 -
Tsu04g03846 305 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Tsu04g03846 305 CDD SANT 9 60 IPR001005 -
Tsu04g03846 305 PANTHER TRANSCRIPTION FACTOR KUA1 5 304 - -
Tsu04g03846 305 Gene3D - 1 73 - -
Tsu04g03846 305 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Tsu04g03846 305 Pfam Myb-like DNA-binding domain 9 58 IPR001005 -
Tsu04g03846 305 MobiDBLite consensus disorder prediction 79 140 - -
Tsu04g03846 305 Gene3D - 140 192 - -
Tsu04g03846 305 PANTHER TRANSCRIPTION FACTOR MYBS1 5 304 - -
Tsu04g03846 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Tsu04g03846 305 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Tsu04g03846 305 SUPERFAMILY Homeodomain-like 7 64 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03846 Tsu-Chr4 47343821 47345708 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g03846 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03846 - - gmx:778049 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03846 04 47343821 47345708 Tsu04g03846 04 47343821 47345708 ECH