Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03842 ATGTATTCATCAAATAGTTCTCTCAATGGAAATAACCTAACATTTTCATCTTCTAAATCACCTTTTTCTAATTCCTTTGAAAGCAACTCAACTTCATCAaaagatcatcatcatcatgatcaaAACATTCATTCACTTTTTCCTCTTCCTCCTTTCCCTTTCTTTCAATTCCCTAATTATCCTGATGATATTCATGATCCTTTTCAAGATAATCAACAAATCTTTGATGATGGTGATTTTCAACTTCATCATTCACCTCATGTTGTGAGTACTGATCATAATCAAGATCAGCAGCGGCCTTCGAATTGTTCGATAATCAACAACGCTAACGATGATATTGTTAATAATCTTGTTTCTGAAGCAGGTGATACTAAAGGAAAAACAATAGTGAATCATCAGGTGCAGCAGATCCAACAAAGAAAAAGATCTAGCAAACGGGATCGGCATAGTAAGATAAAAACCGCGAAAGGACTAAGGGATAGGAGAATGAGATTGTCTCTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGATTTGAAAAAGCAAGTAAAACAGTTGATTGGTTACTTAACCAATCAAAACTTGAAATCAAACACCTTGCAAGAGAAAAGAATCTTCATTTTCCTACTAAGAGTGCATCTTCAACTTCTGAATGTACTGAAGGTGTTTCAAGCTTGGATAATGAAGATGAAAATCTAGAAGAAccagaacaaaaacaagaaacagTGGTTATGATGAAGAAGAGATCAAGAAATAGAACTAATAAGGTTTCTAGAAAGAGTGCATTCAATTCTATTGGTAGAGAAAAAGCAAGAGAAAGGGCAAGagaaagaacaaaagaaaaattaataaaggcTAGAGCTAGAACATCACTAGTTGATGAATCAAAATCAAGTTCAAAGCAATGTAATGATGAAGGAGGAGGAACAAAAACTAACCTTATTTGGAACCCTTTTGAAAGTGTTGAAGAATCTGGAGGATGTACACATCAAAGACAAAGTGTGAATCATCCTTCTTTTGATCATGTGAAGCTGATTAATGAAGGTGAAGTTGAAAGAAGCTGTCAAAAAGCTAAGGAACAAGATtcagatgaagatgatgattctTTGTTCATTATGAGCAAATGGAGTCCACCTTTGATGTTCAATTCTCTCAATAACCTTCAACAACATCAATTTGAACAATTTCATCAATCTATGGAAAAACCATGTTGGGAAGGCTACAACAACCGCATCTAA 1248 0.3197 MYSSNSSLNGNNLTFSSSKSPFSNSFESNSTSSKDHHHHDQNIHSLFPLPPFPFFQFPNYPDDIHDPFQDNQQIFDDGDFQLHHSPHVVSTDHNQDQQRPSNCSIINNANDDIVNNLVSEAGDTKGKTIVNHQVQQIQQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKHLAREKNLHFPTKSASSTSECTEGVSSLDNEDENLEEPEQKQETVVMMKKRSRNRTNKVSRKSAFNSIGREKARERARERTKEKLIKARARTSLVDESKSSSKQCNDEGGGTKTNLIWNPFESVEESGGCTHQRQSVNHPSFDHVKLINEGEVERSCQKAKEQDSDEDDDSLFIMSKWSPPLMFNSLNNLQQHQFEQFHQSMEKPCWEGYNNRI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03842 415 MobiDBLite consensus disorder prediction 133 152 - -
Tsu04g03842 415 MobiDBLite consensus disorder prediction 211 226 - -
Tsu04g03842 415 MobiDBLite consensus disorder prediction 19 43 - -
Tsu04g03842 415 PANTHER TRANSCRIPTION FACTOR TCP18 57 379 - -
Tsu04g03842 415 Pfam TCP family transcription factor 144 285 IPR017887 -
Tsu04g03842 415 ProSiteProfiles TCP domain profile. 145 203 IPR017887 -
Tsu04g03842 415 MobiDBLite consensus disorder prediction 211 314 - -
Tsu04g03842 415 MobiDBLite consensus disorder prediction 266 297 - -
Tsu04g03842 415 ProSiteProfiles R domain profile. 268 285 IPR017888 -
Tsu04g03842 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 57 379 IPR005333 GO:0003700
Tsu04g03842 415 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03842 Tsu-Chr4 47295743 47297308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03842 13 403 TCP Transcription Factor Family AT3G18550 30.045 2.62e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu04g03842 TCP 9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03842 - - gmx:100803669 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03842 04 47295743 47297308 Tsu04g03842 04 47295743 47297308 ECH