Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03836 ATGGGAGGAACTAACAGCAGCCAAAAGCACCAAACAAAGGATGAATCGTCAAAAGGTACAATGAAGCCTAATGATTCCACAGAAGATGTTAGTACGAATAGCTCCGACTCTCTAATGATTTCCAACTGTAAAGTGCTCGAttgctatttttgttttcaaccaTTAAGTATTCCCGTCTTTCAGTGTGATAACGGTCATATTGTTTGCTCTACTTGCTATCCTAAGCTCAAGAACCATTGTAAAAAATGCTCATTGCACATTAGCTCAAAACGTTGTAAAGGTATTGAGAATATATTGATGTATATCGGAATGTCATGTCCGAATACAAAATATGGTTGCAAGGAGAAAATCGTAAGTCTTATTGAAAATACATGCCATGACGTACAATGCATCCATATGCCATGCAACTGCCCTCTTTTAGGATGTGACTTTGTTGCTTCATCAGAAGATTTGTCCAACCATTTCAGCCGTAAACACATGGATTTGCTAATCAAATTTTCTTATCGGCACTCCTTCACTGTCTCCATGAAGTCTAATGATGAAACCATTTATCTTCAAGAGGAAAATGATGACAGACTATTTATTCTTAATAATAGAACGACAATTTTGGGAAATGCAGTAAATATTTGCTGCATTGGTCCGAAGTCTTCTGAATTGGAgtatttttatgatattaaaGTTGGCAACATGTTAACTTTTCATTCTCTTGCAAAGATGGTCCAACGGTTTATTTCAACAACTCTTTCACCGGAGTTCCTTATTCCATTTGGTTTTCCTCGAGCTCTAGAAATTTGTATAACATCCCCCATGATTCAAATCGTAGTACTCTACATGACTGGAGAGAGTATTCCTCTGATTGTTAAGCGTTCTGACACAATATTCGATGTgaagaagaagatttttgaCAAGATGGGTATCCCACCGGAACATCAACGTTTGATCCTTAATCTTAAGCAACTAAAATCTATTCAAACCATTGGCAATTACAACATCCAGGAGAAGACAAAAATCCACCTGGTCTTGCGCCTCCTTGGAAATTAG 1041 0.3593 MGGTNSSQKHQTKDESSKGTMKPNDSTEDVSTNSSDSLMISNCKVLDCYFCFQPLSIPVFQCDNGHIVCSTCYPKLKNHCKKCSLHISSKRCKGIENILMYIGMSCPNTKYGCKEKIVSLIENTCHDVQCIHMPCNCPLLGCDFVASSEDLSNHFSRKHMDLLIKFSYRHSFTVSMKSNDETIYLQEENDDRLFILNNRTTILGNAVNICCIGPKSSELEYFYDIKVGNMLTFHSLAKMVQRFISTTLSPEFLIPFGFPRALEICITSPMIQIVVLYMTGESIPLIVKRSDTIFDVKKKIFDKMGIPPEHQRLILNLKQLKSIQTIGNYNIQEKTKIHLVLRLLGN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03836 346 MobiDBLite consensus disorder prediction 1 35 - -
Tsu04g03836 346 Pfam Ubiquitin family 275 343 IPR000626 GO:0005515
Tsu04g03836 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 268 IPR044286 -
Tsu04g03836 346 Gene3D - 267 346 - -
Tsu04g03836 346 SUPERFAMILY Ubiquitin-like 267 346 IPR029071 -
Tsu04g03836 346 SUPERFAMILY TRAF domain-like 105 220 - -
Tsu04g03836 346 SMART ubq_7 271 342 IPR000626 GO:0005515
Tsu04g03836 346 ProSiteProfiles Zinc finger SIAH-type profile. 101 160 IPR013010 GO:0008270
Tsu04g03836 346 ProSiteProfiles Ubiquitin domain profile. 271 346 IPR000626 GO:0005515
Tsu04g03836 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 155 IPR013083 -
Tsu04g03836 346 PRINTS Ubiquitin signature 323 344 IPR019956 -
Tsu04g03836 346 PRINTS Ubiquitin signature 281 301 IPR019956 -
Tsu04g03836 346 PRINTS Ubiquitin signature 302 322 IPR019956 -
Tsu04g03836 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03836 Tsu-Chr4 47202976 47204805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03836 271 346 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 53.947 3.45e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03836 K04506 - gmx:100778869 213.386