Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03825 ATGTCTTGTTCTCCAACTCCAAAGCATGATGTGTTCCTCAGCTTCAGAGGAGAGGATACACGTGACAACTTCATCAGTCATCTTTATGCTGAACTGGGCAGGAAAAAGATTGAAACATTCATGGATCACAAACTCGGTAGGGGCGAAGAGATTTCACCAGCACTCTACAAAGCAATTGAAGAATCAATGATTTATGTTGTCATTTTGTCCGAGAACTACGCTTCTTCCACATGGTGTTTGGATGAACTCACAAAGATACTCGAATGCAGAGAAAAATATGGAAGGGATGTAATACCTGTCTTCTATAAGGTGGATCCATCAAATGTGAGGAATCAGAGAAATAGTTATGCAGAAGCTTTTGTTAAGCATCAACGTCGATTTAAGGATGATCAACTTGATTCATGGAAGAAAGCTCTAACCCAAGTTGCTGGACTCTCTGGATGGGATTCACAAGTAACCAGACCAGAACACAGACTTATTGAAGATATTGTGAAAGatattttgagaaaattgaaCCTGAATTATTCTTTTGGAAGTGACTATCAAGGAATGATTGGAATTGACAAACATACTAAAGAAATACACTCACTGTTGCACATTGAGTCTGCGGCTGTTCGAATTATAGGAATTTGGGGTATGGGAGGAATAGGAAAAACAACAATTGCTACTGCAATATATCACAAACTGGCAACTCAATTCAGTTCTAATACCATCCTAAATGTTCAACAAGAAATGGAGAGATTTGGACTAGACCATGTACGAAGCAAATATATATCAAAGATTTCATCCTCAAGATTCAGTTTTTCAAATGATGGAAGGATCAAATGGAAAAAGGCTCTCCTTGTTCTTGATAATGTGAACAATTCGGCGCAACTTAAAGATTTAATTGGACCAGGTAGTAACATTGCGCCAGAAGATTATGCGGAGTTATCAGAGAAGATAGTAAATTATGCCAAAGGGGTTCCATTAGCTCTCAAAGTTTTGGGATTTTTGCTGTGCGGTAGAACaaaggaagcatgggaaagtCAGTTACGAAAGCTGGATAGGCTACCCgaaaatgacattttcaaaGTGTTGAAATTAAGTTATGAAGGGcttgatgaagaacaaaaagATATATTTCTTGACATAGCTTGTTTCTATAGAGGGCATTTGGAGAATGTTGTAGCACAAACCCTGGATAGTTGTGGTTTCTCTGCTCACATTGGAATGGATATTCTCAAAGATAGGTGCCTTATTTCTGTATCAGAAGGAAGAATTGTGATGCACGATCTAATACAGGAAATGGGACATGAAATTGTTCGTCAACAATGTGTCAATGCTCCTGGAAAACGTAGTCGACTATGGAAGCCTGAGGAAATTTATCAAGTTTTGAAGAAGAACAAGGGGACGGATGCAATCCAGTGTATATTCCTGGACATATGCAAGATAGAAAAAGTTCAACTACATGCTAAAACTTTCAGAAAAATGGATAATCTTAGAATGATGCAGTTCTATAATTCTCATGGTTGTTCAAAAGGCTCAAATATTGTCCTTCCTGCATTTTTTAATAGTCTTCCAGatgatttaaaatttcttcactGGGATGACTTCTCTCAGAAATCATTGCCACTAGACTTTTTCCCCAAAAATCTAGTTAAACTTTACATGCCTCATAGCCATCTTAATCAACTTTGGCAGACAGATAAGGATTTACCAAATTTGAAAACACCTGATCTTCGTGGCTCTCAAAACCTGATTCAAATACCAGACCTCGCTCAATGCCCAAATATTGAAGAAGTGATTCTTAGTCATTGTCCAAAGTTGAGTCAAGTTTATTCTTCTAGTTTTCTCTGCAAACTCAAATGTTTATGGTTAAATGGTTGTGTTAGCCTTAGGAGTTTACACATTCCATGCAATATTCTCCAGAGAACTTCTGGATTATTAGTGCTCCATGGTTGTCACAATCTTGAGATGTTTTCAGTCAGTAATGCAAAAATGGAGGTTCAGCTACATGGTTGTTCAACCAGTATGTTCAGAAACATTGTTCCTGTGGCAAAACAAAGTGGCAAGCGATTAGATTCCTTTTGTTCGAATTTGAATCAACTCCCCCTCAAAGTTAATTTTAGGCGTCGTCTTATACAAAATGAAGCCTCGTTTACTCTTGACCCCCTGGATTATGCTGAATTAAACAAAGAACCAAAGGATAATATAGAATTACTAAACTTCGCATTGTTGAGAGAAGGTTCACCCTCATCATTTCCAAGTCTAAATGCACTTTGTTGGTTAGATCTCTCCAACTGTGAAGCACTCTTTAGTCTTCCAATTGACCTTtttaagttgaaatttctaAGAAGACTTTACCTCAGTGGTTGCTTGAGTTTGGAGACGTTTCCTGAAATCGAGGAGGATATAGAAAGTTTAGCGGTGCTCATCTTAGACGAAACATCAATCAAAGAACTACCTTCATCGTTGCACCGTTTGGTAAACCTTGAAGAGTTAAGCTTGTACAATTGCCAGTCGCTTGAGACTATTCCATCTTCCATTGGAAGTCTAAGAAAACTCAGCAAGTTAAACCTTACCTTCTGTGAATCACTTGAAACTTTTCCAAGCAGCATTTTCAAATTGAAGTTGACAAAACTTAATTTGACTGGTTGCTTAATGCTGAAGATTTTTCCAGAGATTTTGGAGCCTGCAGAAACTTTTGTTCACATTAACTTAACGCGAACAGCAATTAAGGAACTGCCTTCATCTTTGGAGAATTTGGTTGGGCTTCAAACCTTGTGGCTGAAGTTATGCACTGAGCTGGTGTCAATTCCAAACAGCATTGTTAATCTAAACCATCTATCTGAGCTTGATTGTTCTGGTTGTTGCAGTATTGTGAACCTTCCTGAGATTATAGCTCATCTCTCAAGCTTGAAATCACTTCATTTAAGTGATTGTAGAAAGCTTGAATGTATCTCACAGCTTCCACCATCTTTAAACAAGTTGTTGACATATGATTGCTCCCATAACATTACTCACATTTGA 3009 0.3676 MSCSPTPKHDVFLSFRGEDTRDNFISHLYAELGRKKIETFMDHKLGRGEEISPALYKAIEESMIYVVILSENYASSTWCLDELTKILECREKYGRDVIPVFYKVDPSNVRNQRNSYAEAFVKHQRRFKDDQLDSWKKALTQVAGLSGWDSQVTRPEHRLIEDIVKDILRKLNLNYSFGSDYQGMIGIDKHTKEIHSLLHIESAAVRIIGIWGMGGIGKTTIATAIYHKLATQFSSNTILNVQQEMERFGLDHVRSKYISKISSSRFSFSNDGRIKWKKALLVLDNVNNSAQLKDLIGPGSNIAPEDYAELSEKIVNYAKGVPLALKVLGFLLCGRTKEAWESQLRKLDRLPENDIFKVLKLSYEGLDEEQKDIFLDIACFYRGHLENVVAQTLDSCGFSAHIGMDILKDRCLISVSEGRIVMHDLIQEMGHEIVRQQCVNAPGKRSRLWKPEEIYQVLKKNKGTDAIQCIFLDICKIEKVQLHAKTFRKMDNLRMMQFYNSHGCSKGSNIVLPAFFNSLPDDLKFLHWDDFSQKSLPLDFFPKNLVKLYMPHSHLNQLWQTDKDLPNLKTPDLRGSQNLIQIPDLAQCPNIEEVILSHCPKLSQVYSSSFLCKLKCLWLNGCVSLRSLHIPCNILQRTSGLLVLHGCHNLEMFSVSNAKMEVQLHGCSTSMFRNIVPVAKQSGKRLDSFCSNLNQLPLKVNFRRRLIQNEASFTLDPLDYAELNKEPKDNIELLNFALLREGSPSSFPSLNALCWLDLSNCEALFSLPIDLFKLKFLRRLYLSGCLSLETFPEIEEDIESLAVLILDETSIKELPSSLHRLVNLEELSLYNCQSLETIPSSIGSLRKLSKLNLTFCESLETFPSSIFKLKLTKLNLTGCLMLKIFPEILEPAETFVHINLTRTAIKELPSSLENLVGLQTLWLKLCTELVSIPNSIVNLNHLSELDCSGCCSIVNLPEIIAHLSSLKSLHLSDCRKLECISQLPPSLNKLLTYDCSHNITHI 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03825 1002 Pfam NB-ARC domain 192 246 IPR002182 GO:0043531
Tsu04g03825 1002 SUPERFAMILY "Winged helix" DNA-binding domain 354 459 IPR036390 -
Tsu04g03825 1002 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 308 768 - -
Tsu04g03825 1002 SUPERFAMILY L domain-like 421 664 - -
Tsu04g03825 1002 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 300 IPR044974 GO:0006952
Tsu04g03825 1002 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 819 936 IPR044974 GO:0006952
Tsu04g03825 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 377 IPR027417 -
Tsu04g03825 1002 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 745 841 - -
Tsu04g03825 1002 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 6 300 - -
Tsu04g03825 1002 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 819 936 - -
Tsu04g03825 1002 PRINTS Disease resistance protein signature 273 287 - -
Tsu04g03825 1002 PRINTS Disease resistance protein signature 961 977 - -
Tsu04g03825 1002 PRINTS Disease resistance protein signature 207 222 - -
Tsu04g03825 1002 SUPERFAMILY L domain-like 744 981 - -
Tsu04g03825 1002 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 745 841 IPR044974 GO:0006952
Tsu04g03825 1002 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 308 768 IPR044974 GO:0006952
Tsu04g03825 1002 SMART till_3 8 145 IPR000157 GO:0007165
Tsu04g03825 1002 Gene3D Ribonuclease Inhibitor 732 892 IPR032675 -
Tsu04g03825 1002 Gene3D Ribonuclease Inhibitor 454 672 IPR032675 -
Tsu04g03825 1002 ProSiteProfiles TIR domain profile. 7 171 IPR000157 GO:0007165
Tsu04g03825 1002 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 148 IPR035897 -
Tsu04g03825 1002 Gene3D - 6 176 IPR035897 -
Tsu04g03825 1002 Gene3D - 291 367 IPR042197 -
Tsu04g03825 1002 Gene3D Ribonuclease Inhibitor 893 1001 IPR032675 -
Tsu04g03825 1002 Gene3D - 184 290 IPR027417 -
Tsu04g03825 1002 Pfam TIR domain 8 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03825 Tsu-Chr4 47107235 47110850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03825 818 994 WRKY Transcription Factor Family AT4G12020 37.853 2.28e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03825 - - ccaj:109803335 1063.91