Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03823 ATGGCAGAACCAGAAAACAACCTCCAAATTTCTTCATCCATTGATGAAACCAATAACAATCATAAacacaagaagaagaataagcACGACAAAAAGAGACCTCGTGATATTgttgaggaagaagaagaagatgagaatGTGAATAATACTCATAGCAATGGAGAATcatcaaaaaagaagaagaagaagaacaagaagaaggaTGGGGAGAATGAAGTGGAAGTAGAAAATGAATTGGAAGAGAAAAAAGTGAAGAACAATAGTGGTTCTGGAATTATGAGCAATGAATCATTTGATTCTCTTGAATTGTCTAAATCTACTTCTAAAGCTATTATGGATATGGGATTCCAAAACATGACTCAGATTCAAGCAAGAGCAATTCCACCACTTTTGAATGGAAAAAATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAATTCCTGCGGTGGAGCTTTTGCACAAGCTTAAATTTAATCCCCGAGATGGAGCTGGTGTTGTTGTCATATGCCCTACTAGAGAGCTTGCTATTCAGACGCATGATGTTGCCAAGGAGCTTCTAAAGTATCATTCACAAACTCTTGGATTGATTATTGGAGGTTCATCTAGAAAAACTGAAGCTCAAGACCTTGCTAAAGGGGTAAATATATTGGTAGCTACTCCTGGTCGTCTTCTGGATCATCTACAAAATACCAAGAGATTCATTCATAATAAACTGAAGTGCCTCATTATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGATGAATTGAAGCAGATTCTCAAGATCCTCCCAAAGGACAGGCAGACAGCTTTATTTTCAGCTACACAAACACAGAAGATTGAAGATCTTGCTCGCCTGTCATTTCAAGAGACTCCTATCTATATTGATGTAGACGATGGAAGAAAGAAGGTCACAAATGAAGGATTGCTTCAGGGTTATGTTATTGTCCCCTGCGCCAAGCGATTTATGGTTCTCTATTCCTTCTTGAAGAGGcatcaaacaaaaaaagtgaTGGTCTTTTTCTCTTCATGCAACAGTGTCAAATTCCATGCAGACATTTTTAATCACATCAATTTGCATTGTGCAAGTATTCATGGCAAACAAAAGCAGCAGACCCGGACAACTACTTTCTTTGACTTCTGCAAAGCAGAAAATGGAGTCTTGCTCTGTACTGACGTTGCTGCTCGTGGACTGGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGAAATTTCTTTGCTATCTGAAGGAAGCTAAGGTCCCTGTGAAAGAATATGCTTATGATGAAAAGAAGGTGGCAAATGTACAGTCTCACTTGGAGAATTTGGTTGgcgaaaattattttttgaacaaaatggCTAAAGAAGCTTATAGATCATACATATTAGCATACAATTCACATTCCATGAAGGATATATTCAGTGTTAAGCGCCTTGATTTGCAGGATGTTGCTACTTCATTCTGTTTTTCGAACCCTCCAAATGtgagtataaatataaacaCCAGCAACCAAAGGAAGAACACACGTAAAGTTGATGGAAGTAGGCATGGATTCAATCCCAACAATCCTTATGGAAAGCGAAATGCTGATGATAAGCGACAATTTGTGAGGCATTGA 1746 0.3608 MAEPENNLQISSSIDETNNNHKHKKKNKHDKKRPRDIVEEEEEDENVNNTHSNGESSKKKKKKNKKKDGENEVEVENELEEKKVKNNSGSGIMSNESFDSLELSKSTSKAIMDMGFQNMTQIQARAIPPLLNGKNVLGAARTGSGKTLAFLIPAVELLHKLKFNPRDGAGVVVICPTRELAIQTHDVAKELLKYHSQTLGLIIGGSSRKTEAQDLAKGVNILVATPGRLLDHLQNTKRFIHNKLKCLIIDEADRILEANFEDELKQILKILPKDRQTALFSATQTQKIEDLARLSFQETPIYIDVDDGRKKVTNEGLLQGYVIVPCAKRFMVLYSFLKRHQTKKVMVFFSSCNSVKFHADIFNHINLHCASIHGKQKQQTRTTTFFDFCKAENGVLLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELKFLCYLKEAKVPVKEYAYDEKKVANVQSHLENLVGENYFLNKMAKEAYRSYILAYNSHSMKDIFSVKRLDLQDVATSFCFSNPPNVSININTSNQRKNTRKVDGSRHGFNPNNPYGKRNADDKRQFVRH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03823 581 MobiDBLite consensus disorder prediction 541 581 - -
Tsu04g03823 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 486 IPR001650 -
Tsu04g03823 581 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 48 575 - -
Tsu04g03823 581 MobiDBLite consensus disorder prediction 1 16 - -
Tsu04g03823 581 PANTHER RNA HELICASE 48 575 - -
Tsu04g03823 581 Gene3D - 318 555 IPR027417 -
Tsu04g03823 581 CDD DEADc_DDX18 107 304 IPR044773 GO:0003724|GO:0005524
Tsu04g03823 581 MobiDBLite consensus disorder prediction 1 97 - -
Tsu04g03823 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 124 IPR014014 GO:0003724
Tsu04g03823 581 SMART DUF4217_3 477 540 IPR025313 -
Tsu04g03823 581 Pfam DEAD/DEAH box helicase 120 291 IPR011545 GO:0003676|GO:0005524
Tsu04g03823 581 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
Tsu04g03823 581 Pfam Helicase conserved C-terminal domain 332 436 IPR001650 -
Tsu04g03823 581 CDD SF2_C_DEAD 317 447 - -
Tsu04g03823 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 302 IPR014001 -
Tsu04g03823 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 459 IPR027417 -
Tsu04g03823 581 SMART helicmild6 356 437 IPR001650 -
Tsu04g03823 581 Pfam Domain of unknown function (DUF4217) 478 538 IPR025313 -
Tsu04g03823 581 Gene3D - 40 306 IPR027417 -
Tsu04g03823 581 SMART ultradead3 115 320 IPR014001 -
Tsu04g03823 581 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03823 Tsu-Chr4 47095755 47102529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03823 95 456 Eukaryotic Initiation Factors Gene Family AT3G13920 31.233 9.05e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03823 K13179 - gmx:100798885 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03823 04 47095755 47102529 Tsu04g03823 04 47095755 47102529 ECH