Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03820 ATGGATCCCATGGATATCGTCGGTAAATCGAAGGAAGATGCTTCGCTTCCTAAAGcaacaatgacaaaaataattaaagagatGTTACCTCCAGATGTACGCGTTGCAAGAGACACCCAAGATCTATTGATTGAGTGCTGCGTAGAGTTTATAAATCTCATCTCATCAGAGTCCAATGAAGTATGTAGTAGAGAGGACAAACGGACTATTGCACCTGAGCACGTATTGAAGGCTCTACGGGTGCTTGGATTTAGTGAGTACATTGAAGAAGTTTATGCAGCATACGAACAGCACAAGATGGAGACCATgCAGGACTCTTTAAAAGGTGGTGGTAAATTTAGCAGTGGAGCTGAGATGACAGAGGAAGAAGCATTAGCAGAACAACAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGCGGGGCCATTGCTTCCAAGCAGCCAGATGGTGACCAAAATTTAGATAGCTAA 474 0.4198 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALRVLGFSEYIEEVYAAYEQHKMETMQDSLKGGGKFSSGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDGDQNLDS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03820 157 PANTHER PROTEIN DR1 HOMOLOG 1 156 IPR044255 -
Tsu04g03820 157 PANTHER PROTEIN DR1 HOMOLOG 1 156 - -
Tsu04g03820 157 SUPERFAMILY Histone-fold 12 144 IPR009072 GO:0046982
Tsu04g03820 157 Gene3D Histone, subunit A 4 144 IPR009072 GO:0046982
Tsu04g03820 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03820 Tsu-Chr4 47078597 47082315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03820 1 153 CCAAT-DR1 Transcription Factor Family AT5G23090 81.290 6.55e-90 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu04g03820 CBFD_NFYB_HMF 9.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03820 K21751 - gmx:100807912 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03820 04 47078597 47082315 Tsu04g03820 04 47078597 47082315 ECH