Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03818 ATGAATAACAGAAAAGTGAAAGTACATAGTGGAGGTGGAGTTTTTGATTATTCTAAATGGAGAGATTTAAAAGTTGGAGACATAGTGAAAGTGGAAAAAGATGAGTATTTTCCTGCTGATCTTATATTACTTGCATCAAACTACGATGATGCGATTTGCTATGTTGATACGATGAATCTCGACGGAGAAACAAATCTTAAACTAAAACAAGCACTTGAAGGTACTTCAAAATTTCAAGAAGACTCAGACTTTCAGAATTTCAAGGCTGTGATAAGATGCGAAGATCCAAACGCGAATTTGTATGCGTTTGTAGGAAGTTTAGAGCTTGAAGAAGATCAACAATTTCCACTTGCACCTCAGCAGCTTCTTCTTAGAGATTCTAAGTTGAAGAACACAGATTTTATCTATGGTGTTGTGATCTTTACCGGTCACGATACAAAGGTTATGCAGAATTCAACAGATCCTCCATCCAAGAGAAGTAAGATTGAGAAAAGAATGGACAAAGTTATATACTGTTTGTTCTTTGtattaattttggtttcattTATCGGTTCGATTTTCTTCGGTATTTGGACAAAGAAGGATATTAAAAATGGAAGAATGAAGAGATGGTACCTTGATCCTGAGCATACTAAAGTTTACTATGATCCTGATAGAGCAGTACTTGCAGCAATTCTTCATTTCTTTACAGCATTGATGTTGTATGGTTACTTTATTCCGATTTCGTTGTATGTTTCGATTGAAGTTGTGAAGGTTCTTCAAAGCATTTTCATCAACAACGATTTGAACATGTATCACGAGGAAACTGATAAGCCAGCACATGCTCGTACATCGAATTTGAATGAAGAACTTGGTCAAGTTGATACCATACTTTCGGATAAAACCGGAACATTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGGTGGTGTTGCTTATGGAAGAGGTTTTACAGAAGTTGAGAGAGCTTTATCTAAGAGAAAAGATTCATATTTCGGTCGGAAGAtgcaaaatgacaaaaatgttGCAAAGGCTGCTGAATCAAAATCAACCATTAAAGGATTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGGTGAGACAACCTAATGCCAATGTGATACAAAGCTTTCTAAGGGTATTAGCTGTATGCCATACCGCAATACCTGAAGTTGATGAAGCAACCGGTAAAATTTCGTACGAAGCTGAATCACCGGACGAGGCTGCTTTTGTTGTTGCGGCAAGAGAGTTTGGATTTGAATTTTATGAAAGGACACATGCAGCTATTTCACTTCATGAATTGGACCTCAATTCAAACATGAAATCAGAAAGGTCCTACaatattttaaatgtattaGAGTTTAGTAGTGCAAGAAAGCGAATGTCCGTAATCGTAAGAGACCACAAGGGAAAACTACTGCTACTTAGCAAAGGCGCTGACAGTGTCATGTTTGAACTACTTGGAAAGAATGGAAGGGAGTATGAAGAGCAGACTAAGTACCACATTAATGAATACGCTGATTCTGGTTTGAGGACGTTGATACTTGCTTACCGTGAACTCAACGAGGAAGAGTACAGCCAGTTTAATAGAGAGTTGACAGATGCTAAAAACTTAGTGAGTGCCGATCAGGAACAGATTGTAGAAGACATATTGCAAAAGATTGAGAAGGATTTGATTCTTCTTGGTGCTACCGCAGTTGAAGATAAACTACAAGACGGGGTTCCTGAATGCATTGACAAACTAGCTCAGGCCGGGATTAAGTTATGGGTATTGACCGGTGATAAAATGGAGACAGCAATTAATATCGGATATGCTTGTAGTTTGCTTCGACAAGGAATGAAACAAATTATCATTAATTCAGATACTCCTGAAAACAAATTGCTCGAGAAAATGGAGGACAAATCTGCTTCTGAAGCGGTAAGCCATTTTTGTAATCATCATGCGTTAGAATCTTATTAA 1971 0.3663 MNNRKVKVHSGGGVFDYSKWRDLKVGDIVKVEKDEYFPADLILLASNYDDAICYVDTMNLDGETNLKLKQALEGTSKFQEDSDFQNFKAVIRCEDPNANLYAFVGSLELEEDQQFPLAPQQLLLRDSKLKNTDFIYGVVIFTGHDTKVMQNSTDPPSKRSKIEKRMDKVIYCLFFVLILVSFIGSIFFGIWTKKDIKNGRMKRWYLDPEHTKVYYDPDRAVLAAILHFFTALMLYGYFIPISLYVSIEVVKVLQSIFINNDLNMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGRGFTEVERALSKRKDSYFGRKMQNDKNVAKAAESKSTIKGFNFMDERIMNGNWVRQPNANVIQSFLRVLAVCHTAIPEVDEATGKISYEAESPDEAAFVVAAREFGFEFYERTHAAISLHELDLNSNMKSERSYNILNVLEFSSARKRMSVIVRDHKGKLLLLSKGADSVMFELLGKNGREYEEQTKYHINEYADSGLRTLILAYRELNEEEYSQFNRELTDAKNLVSADQEQIVEDILQKIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGYACSLLRQGMKQIIINSDTPENKLLEKMEDKSASEAVSHFCNHHALESY 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03818 656 Pfam E1-E2 ATPase 3 215 - -
Tsu04g03818 656 Gene3D - 333 567 IPR023299 GO:0000166
Tsu04g03818 656 PRINTS P-type cation-transporting ATPase superfamily signature 588 598 - -
Tsu04g03818 656 PRINTS P-type cation-transporting ATPase superfamily signature 56 70 - -
Tsu04g03818 656 PRINTS P-type cation-transporting ATPase superfamily signature 291 305 - -
Tsu04g03818 656 SUPERFAMILY HAD-like 558 626 IPR036412 -
Tsu04g03818 656 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 640 - -
Tsu04g03818 656 Pfam Cation transport ATPase (P-type) 399 489 - -
Tsu04g03818 656 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 381 IPR023298 -
Tsu04g03818 656 CDD P-type_ATPase_APLT_Dnf-like 2 638 - -
Tsu04g03818 656 Gene3D - 568 655 IPR023214 -
Tsu04g03818 656 Coils Coil 522 542 - -
Tsu04g03818 656 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 640 - -
Tsu04g03818 656 ProSitePatterns E1-E2 ATPases phosphorylation site. 293 299 IPR018303 -
Tsu04g03818 656 SUPERFAMILY Calcium ATPase, transduction domain A 7 151 IPR008250 -
Tsu04g03818 656 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 1 638 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu04g03818 656 Gene3D - 1 153 - -
Tsu04g03818 656 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 364 567 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03818 Tsu-Chr4 47054788 47060212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03818 1 646 Primary Pumps ATPases AT1G13210 69.492 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03818 K01530 K14802 gmx:100796405 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03818 04 47054788 47060212 Tsu04g03818 04 47054788 47060212 ECH