Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03816 atgtcTTTGATCTCTCAAGAAATAGATAAATccaatgagaagaaaaaaagtacTACTATTAAGAAAGTtccaaaaatatcaaacaaggGTCAGAAAAAGTATCTAGGAGTAAGACAAAGACCTTCAGGAAGATGGATAGCTGAGATCAAAGACTCATCACAGAAACTAAGACTATGGTTAGGAACATTTGACAGAGCAGAAGATGCTGCTATGTCTTATGACTCTGCTGCAAGACTTCTTAGAGGAAGAAATGCTAAAACAAATTTTCCAAATACTCATGAACAAGATTTCAGCATTTTAGGGAAGAATCCAAGAGCTTTTCAGCTTCTTAAACATGCAATGATGAAAAACCATGcagtttcatcttcttcatctgtTTATTCTAGTTTCATGATGCCTTGGAAAAATGATCAGCTCGACGCGATTGTCGAGGATACTATTGTTTGTTCTATTCCTGATGAAGGTGAAGGTTCTTCTATAGGGTGTAGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTTAATTAG 552 0.3116 MSLISQEIDKSNEKKKSTTIKKVPKISNKGQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAAMSYDSAARLLRGRNAKTNFPNTHEQDFSILGKNPRAFQLLKHAMMKNHAVSSSSSVYSSFMMPWKNDQLDAIVEDTIVCSIPDEGEGSSIGCSGISFGSSKVYSSVVVAPSFN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03816 183 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Tsu04g03816 183 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Tsu04g03816 183 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Tsu04g03816 183 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g03816 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 182 - -
Tsu04g03816 183 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Tsu04g03816 183 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Tsu04g03816 183 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Tsu04g03816 183 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Tsu04g03816 183 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Tsu04g03816 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 4 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03816 Tsu-Chr4 47040448 47040999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03816 15 91 AP2-EREBP Transcription Factor Family AT5G19790 60.256 4.94e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g03816 AP2 8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03816 - K09286 var:108340966 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03816 04 47040448 47040999 Tsu04g03816 04 47040448 47040999 ECH