Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03810 ATGATGATGAACGATGATATTGCGAACAATACAGAAGTTGAAGCTTCTGTGGAAATCAATGTTCGTTCAACAATAGCGGACGAAAATCAAATGAGGTTCGGTGTGGTGAGCAAATACGATGACGATGAAGGACGATaTTACATCTATGCTTTTTCAACCTTCATCTCTTGCCACAACACACATGCacaacaaattttgtttctaaATCTCCAAGGTAAATGGAATATTGTTCTAAGCGGTAAAAAAATGAAGTGCTTATGTGAGAAAGATTCTGCTCATTCAACATCCCACCATGTTTTTGGATGTCCATCATCGTGGGGGACTTCTGAATCTGAAGTCCAACAAACTTCCATGTCCAAAAGTTTAAGCTTCAAAGTGAAAGCTCTGCCACAAAAGTGCCACAATAGTAAGGCGTTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGTCTGGCTCATCACAATCAGCTATGTCCCCAGGTCAAATTCCTTTTCAGCACAGTTCTTCTACTGGTTCAACATTTAAGAGAACCGAGGAGAATAGTATGGGATGTCTCATTGGGACATCATCTATTGGGACTCCAAATCTCACCATCCATCCTCCACTAGTGGAACACAGCCAATCACTTGTAAGCAGATATATCTCTATGCGCATATTGCACTCCACTTATCCATGCTACAATGACCTACTTTCTGCTTCATATGGCCAACAATATAAGGCTTATGGCATCATGTCATCAAACTCTGACCTTCTTCATGGCCAACTAATGGAAACTGCTCCTTGTCGAGCAAAACTTGAAGCACATAACAAACTCATCAAGGATCGTAAACCATATCTTCACGAGTCTCGCCATGTACATGCATTAAAGGGAGCTAGAGGTGCAGGTGGCCGCTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCAAGCTTCACAAAACCATGGCCAAAATGTTTCCACCAGCTATacttgtttgaaatttgaatggaaATATGTCAGAATCTAA 1017 0.3943 MMMNDDIANNTEVEASVEINVRSTIADENQMRFGVVSKYDDDEGRYYIYAFSTFISCHNTHAQQILFLNLQGKWNIVLSGKKMKCLCEKDSAHSTSHHVFGCPSSWGTSESEVQQTSMSKSLSFKVKALPQKCHNSKALSFQFQEQDSSSTQSSGSSQSAMSPGQIPFQHSSSTGSTFKRTEENSMGCLIGTSSIGTPNLTIHPPLVEHSQSLVSRYISMRILHSTYPCYNDLLSASYGQQYKAYGIMSSNSDLLHGQLMETAPCRAKLEAHNKLIKDRKPYLHESRHVHALKGARGAGGRFLNAKKLQESKQASQNHGQNVSTSYTCLKFEWKYVRI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03810 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 266 302 IPR001289 GO:0003700|GO:0006355
Tsu04g03810 338 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 102 263 - -
Tsu04g03810 338 Gene3D - 258 306 - -
Tsu04g03810 338 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 265 322 - -
Tsu04g03810 338 MobiDBLite consensus disorder prediction 148 178 - -
Tsu04g03810 338 ProSiteProfiles NF-YA/HAP2 family profile. 266 305 IPR001289 GO:0003700|GO:0006355
Tsu04g03810 338 SMART cbf3 243 305 IPR001289 GO:0003700|GO:0006355
Tsu04g03810 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 265 322 IPR001289 GO:0003700|GO:0006355
Tsu04g03810 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 102 263 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03810 Tsu-Chr4 46991423 46996964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03810 84 332 CCAAT-HAP2 Transcription Factor Family AT1G72830 34.483 1.25e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tsu04g03810 CBFB_NFYA 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03810 K08064 - gmx:100803893 177.563