Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03797 ATGCGTGGCACGTTTTGGCGTTATCCTCACTTCTGCCTGTCTGCAAATTTCACCTCACTTCTGTTCACTCTGCATTCATTCAGAACAATCTTCCATAACAAACTTTCTGTTATTTCTCTAATGGCACAAGAAACCGTTTCTGGTGCTGAATCACCACAGCGTCGTCAAGGTTTATTACGAGATCAAGTTCAACTTATTAAAAGAAAGGATTCATCATCTGATCGATATGAAATTGTTCCAATTCAAGATTCTTTATCTTTTGAGAAAGGATTTTTCATTGTTATTCGTGCTTGTCAGTTATTGGCTCAAAATAATGATGGAATTGTTTTAGTTGGAGTTGCTGGTCCTTCTGGTGCTGGCAAAACTGTTTTTACCGATAAGGTTTTGAGTTTTATGCCGAGTATTGCTGTTATATCCATGGATAATTATAATGATGCTAGTCGAATCATTGATGGAAACTTTGATGACCCTCGATTGACGGATTATGATACCTTGCTAAAAAATATACAGGATCTTAAATCAGGGAAGCCTGTTCAGGTTCCGATATATGATTTCAAGTCTAGTTCTCGCATTGGATACAGGACTATTGAAGTCCCTAGCTCCCGTATCGTAATCATTGAAGGCATCTATGCCTTAAGTGAGAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTTAAGCGTGTTTTGCGGGACATACAACGAGCTGGTCAAGAGCCTGAAGAAATCATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTGAAAACAGcgcatataaaaattattaacaagTTTAATCCATTCACTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAGCTGTGACAGTGGATCAAATCAAGGCAGTTATTGCTGCAGAGCATACTGAAACCAATGAGGAAACATATGACATATATCTTCTACCCCCTGGAGAAGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACAGGGATGGGAAGTACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTGCTTGGAGGGCTGATGGCCTTGGGCTATACAATTGCGGCAATCCTGAAAAGAAGCAGCCATGTCTTTCACGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAGCTTAATCGCCAATATGTCCAGGTACAAGGGAAAGATAGAAACTATGTTAAATTTGTGGCGGAGAATCTGGGTTTGGATGGTTCCTATGTTCCTCGTACTTACATTGAACAAATTCAACTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGACAAAACTCAGCATAGAAGATGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGGTACTTACTGATTTTCTTCACATATTTAACTTGCCTTACAAAGAAGTTGTTGACATGTCGGTCCCCTGCAGTGGTGTTTCACAGTCATATTCAAATCAAAGGGACAAGATTCTACCTAAGTTGA 1620 0.3883 MRGTFWRYPHFCLSANFTSLLFTLHSFRTIFHNKLSVISLMAQETVSGAESPQRRQGLLRDQVQLIKRKDSSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVLSFMPSIAVISMDNYNDASRIIDGNFDDPRLTDYDTLLKNIQDLKSGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQNPTYILKSAKAVTVDQIKAVIAAEHTETNEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAENLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKTKLSIEDDLVSSPKEALSRASADRRMKYLNRYLLIFFTYLTCLTKKLLTCRSPAVVFHSHIQIKGTRFYLS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03797 539 Gene3D - 109 291 IPR027417 -
Tsu04g03797 539 CDD UMPK_like 110 282 - -
Tsu04g03797 539 PRINTS Uridine kinase signature 175 190 - -
Tsu04g03797 539 PRINTS Uridine kinase signature 231 241 - -
Tsu04g03797 539 PRINTS Uridine kinase signature 267 280 - -
Tsu04g03797 539 PRINTS Uridine kinase signature 108 125 - -
Tsu04g03797 539 Pfam CYTH domain 314 447 IPR023577 -
Tsu04g03797 539 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 46 500 - -
Tsu04g03797 539 Gene3D - 296 456 - -
Tsu04g03797 539 SUPERFAMILY CYTH-like phosphatases 303 450 IPR033469 -
Tsu04g03797 539 ProSiteProfiles CYTH domain profile. 291 453 IPR023577 -
Tsu04g03797 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 279 IPR027417 -
Tsu04g03797 539 Pfam Phosphoribulokinase / Uridine kinase family 111 279 IPR006083 GO:0005524|GO:0016301
Tsu04g03797 539 PANTHER URIDINE KINASE 46 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03797 Tsu-Chr4 46894164 46901363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03797 110 279 PRT Gene Family AT5G40870 29.050 1.76e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03797 K00876 - gmx:100811230 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03797 04 46894164 46901363 Tsu04g03797 04 46894164 46901363 ECH
Tsu02g03252 02 36372842 36389988 Tsu04g03797 04 46894164 46901363 PCT