Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03788 ATGGCTGATGTTACCTATCTTCGTCACCACCACGAACCCGACGATGATCAAACCCTAATCCCTTTACCTTATTTTTCTTCCCCCTCCGATTTCGATTTCGATTTTGATTTATACTCTTCCGATCCCGAATTCCCTCCcaatcaccaccaccacaaccaccatAACCACTTTTCTCGTGAAAATTTCGTCATGGATTTATTCCAACAACGTGTCGAGCAATCTCATGTCATCGATCATACCGATCCTATACATCAATCAATAAACGACTCTGTTTTCGATAGTTTAAGTCTCGATTTAGGGTTCAATACTTCCGATTTCAATTTCGGTATTCATAACAACGTCGATGACGATGAGGATGACGATGATTTTCCTGATATGAGGGTTTCTGGATCAGATCCGATTAACGGCTTACGTATTGTTGAAATTGAATCGGATTCCGACGGTGAAGAAGATGTTGAAGgtaataatgttttttatggGATTTGTGTGCATTCTGATGAAGAAGATTTTAATAATGTAATTGATGAAGTTGCGAATTTTCCTCTCCGTTGGGATTCACTTCAGTTGGAGGATAATCAAATATATGAAGATTTTGAGTGGGAGGAAGTTGATGGTGGATTAGACGCGAGGGATCTTCTTAACAGGCTTGCGCTTGACGACAATAATAGGTCGGTTAATTCCGGTCGTGCTACTCCGTTTATTGAAGAAGATGTAGAAGATGGAGAAGAGGTTAACATGATGATGGTTGGTGGAGGAATGGAAAATCTTGAGTGGCAAGTATTGTTGAATTCGGATTCTGATAATATAGGCACAAGCCCTGAAACTTATCATGTAATTGCAGAGCCTTTTGGGGATAATGATGATTACATTTACACTGCAGAGTATGAGATGATGTTTGGTCAATTCACAGATAATGATAACCCGTTAACCGGTAGGCCTCCGGCTTCTGTAACTGTGGTTCAGAACCTTCCTAATGAGGTTGTGACCAAAAATGATGTGGAGAATAACAATGCTTTGTGTGCGGTTTGTAAAGATGAATTTTCTGTTGGAGAAGAGGTGAAATTGTTGCCGTGTTCTCATCGTTACCATGGTGATTGCATTGTGCCTTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGATATGAGTTCCCCACTGATGATGCTGATTATGAGCGTAGGAAAGCCCCAATGTTGGCCCGGAGCGCTTGA 1212 0.3977 MADVTYLRHHHEPDDDQTLIPLPYFSSPSDFDFDFDLYSSDPEFPPNHHHHNHHNHFSRENFVMDLFQQRVEQSHVIDHTDPIHQSINDSVFDSLSLDLGFNTSDFNFGIHNNVDDDEDDDDFPDMRVSGSDPINGLRIVEIESDSDGEEDVEGNNVFYGICVHSDEEDFNNVIDEVANFPLRWDSLQLEDNQIYEDFEWEEVDGGLDARDLLNRLALDDNNRSVNSGRATPFIEEDVEDGEEVNMMMVGGGMENLEWQVLLNSDSDNIGTSPETYHVIAEPFGDNDDYIYTAEYEMMFGQFTDNDNPLTGRPPASVTVVQNLPNEVVTKNDVENNNALCAVCKDEFSVGEEVKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAPMLARSA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03788 403 SMART ring_2 340 380 IPR001841 -
Tsu04g03788 403 CDD RING-H2_RNF126_like 340 381 - -
Tsu04g03788 403 PANTHER - 14 396 - -
Tsu04g03788 403 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 396 - -
Tsu04g03788 403 Pfam Ring finger domain 340 381 IPR001841 -
Tsu04g03788 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 387 IPR013083 -
Tsu04g03788 403 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Tsu04g03788 403 SUPERFAMILY RING/U-box 327 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03788 Tsu-Chr4 46818277 46819488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03788 17 387 C3H Transcription Factor Family AT5G60820 35.835 1.29e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03788 - - mtr:MTR_4g110100 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03788 04 46818277 46819488 Tsu04g03788 04 46818277 46819488 ECH