Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03787 ATGTCGACTCCGTTAGCTACCTCCAAAAAACGCCCAAATTCCGAAGTGAAAGATGAAGAAACCAACGATGATTGCTGCGGAATTTGCTACATCGAACGCGGAGTTCCAATCCCAGGGAAAATTGATTCATGCAACCATTATTTTTGCTTCGTTTGTATCATGGAATGGGCGAAACATGAATCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGTAGACAACCTAAGCATGGCGTTTTTTCTTACTATCGGGATATTAAGGTCCCTGTTCGTGACCAGGTTTATCATCCTCATGGAAATATGACAACCGGTCCTGTTGATTCTAATGCCGAACTCAAATGCGGTATTTGCAATGTTGTGAAAGATGAGAATCTTATAATAATATGTGATCTTTGTGATACTGCTTCCCATACATATTGTGTTGGCTTGGGCTACACCGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTGCCGCTGCCCAGGAGACTAATGCTAATGACGGGTTAGACCAACAAAATGTTAAGCTAACGGCTGAGCCTGGTGTAGCCATCGAAGATATTGTGAGAGGAACAAGCAGCCAAGTGTTCAGAAGACCAATGGCATCTCCTATACGACAAAACAATTATCCATCTTCTAGTACTCCTTTATTTAATAGAGTGAGTAGATCTGAAGGTAAAAAACCTATGTCGGATGTCCAGCGTGCGAAACATAAGGTTCAGGTGTTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTCAATTAAGGTTCGATAGCAAATCATTTCAATCTGGGGGCACAAGTAGTCAAAAAGAAGATTCTAGTTCTTTATCACATGGCAAATTAGATGATTCACATTCAATGGCTTCCAAAGGCCGTCCACAATCCACAGTCCAAGGTGCTCAATCTAGTAACAGTGGCTTGGAAGACGATATTAGCAAAGCTTGGAAAATGTGGGATAGGGTAAAGATGACAAAACAGACTCCTAGGAGAACTAGCAGCATTCCACAGGGAGTGAATAGGGATCCTCCATGTAGTGGTGCTAGAGAAAAATCATTTGCACCTCGTAGTTGCCCAGAATTGAAAATCCAACAGCCCAGAATATTAGACTTTAGGAACATCAGAACGGAGGAGCAGCGTGACTATTCTAGTCtccaaaaaaatttggaaagTCACCGGTCTCCAATATTGGGAGAGAAAAGGCAAAGTAGGGTCACATGTGACGAGATGCTACAGCATGTGAGGAACAATACTACTCATTCAGAAGGATGCAGGGAACGTCCATTGCCTGGAAAGGCCCATACTAGTACCCACGGTGCTCGTTGTCACGAAGAAAGAAATGTTGCAAAGGAACAAAGACATACTGCTAACTTGGTAACTTCAGTAGGTTCAGCACCCTCTAGTGGCCATTCTGGCCATGTCTTCACCTCTAATAAGGATATGGGTATTTTCAATAAAGAAAAGAGGTTTGCCAAAAGCTCTGGGAATGGGATCACGAAAAATATTGAGGATTCAAAAACAGAGATTCAGTCTCTTGTTAAACTGAATCTGAAGTGCTTAACTAGAGATAAACAATTAGGTGTCGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACTCATACCATCTTGGCTGCTTGCCATTCAGAGTACTCCTCAAAATCAGTATGCAGCCACACTTACAATACTCTACAGTTTCAGAAATCAAATTTAATGCCCAATAGTTGCCTACAATGCTTTAATGTCTTTGTAAATGATGTTGTCAAGTCTGTCATGTTGGAAAAAGTGGGTTGTTCTTGA 1803 0.4154 MSTPLATSKKRPNSEVKDEETNDDCCGICYIERGVPIPGKIDSCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRQPKHGVFSYYRDIKVPVRDQVYHPHGNMTTGPVDSNAELKCGICNVVKDENLIIICDLCDTASHTYCVGLGYTVPEGDWFCHDCAAAAQETNANDGLDQQNVKLTAEPGVAIEDIVRGTSSQVFRRPMASPIRQNNYPSSSTPLFNRVSRSEGKKPMSDVQRAKHKVQVFRENWNSLRSGQLRFDSKSFQSGGTSSQKEDSSSLSHGKLDDSHSMASKGRPQSTVQGAQSSNSGLEDDISKAWKMWDRVKMTKQTPRRTSSIPQGVNRDPPCSGAREKSFAPRSCPELKIQQPRILDFRNIRTEEQRDYSSLQKNLESHRSPILGEKRQSRVTCDEMLQHVRNNTTHSEGCRERPLPGKAHTSTHGARCHEERNVAKEQRHTANLVTSVGSAPSSGHSGHVFTSNKDMGIFNKEKRFAKSSGNGITKNIEDSKTEIQSLVKLNLKCLTRDKQLGVETFKVVARQATHTILAACHSEYSSKSVCSHTYNTLQFQKSNLMPNSCLQCFNVFVNDVVKSVMLEKVGCS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03787 600 MobiDBLite consensus disorder prediction 421 444 - -
Tsu04g03787 600 Pfam PHD-finger 116 160 IPR019787 -
Tsu04g03787 600 SMART ring_2 26 66 IPR001841 -
Tsu04g03787 600 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Tsu04g03787 600 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 8 598 - -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 204 239 - -
Tsu04g03787 600 PANTHER F18C1.6 PROTEIN 8 598 - -
Tsu04g03787 600 Pfam Ring finger domain 25 67 IPR001841 -
Tsu04g03787 600 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
Tsu04g03787 600 SMART PHD_3 115 160 IPR001965 -
Tsu04g03787 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 77 IPR013083 -
Tsu04g03787 600 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 260 277 - -
Tsu04g03787 600 SUPERFAMILY RING/U-box 18 81 - -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 327 355 - -
Tsu04g03787 600 SUPERFAMILY FYVE/PHD zinc finger 108 161 IPR011011 -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 204 223 - -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 291 312 - -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 420 444 - -
Tsu04g03787 600 MobiDBLite consensus disorder prediction 260 313 - -
Tsu04g03787 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 172 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03787 Tsu-Chr4 46812079 46815344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03787 116 166 C2H2 Transcription Factor Family AT3G01460 40.000 8.73e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu04g03787 PHD 1.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03787 - - gmx:100808541 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03787 04 46812079 46815344 Tsu04g03787 04 46812079 46815344 ECH