Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03784 ATGGAGCTTCCTCAATCACGTCCCTGTGGAGCCGAAGGGAGGAAACCGACGCATGATTTTCTATCGCTGTACAGTAATCAAACTGGCGAACAAGATCCAAGGCCATCTGCTCAAGCTAGTTACCTCAAGACCCATGATTTCTTGCGACCACTAGAACAAGTAGAAACGAAATCCGATACCAAGGAAGAAGCCACCGATGAAATCTCATCCGTGGTTCAACCGCCTTTAGCGACACCAGCTTCAGTTGAGCACATTTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTACGTCAATAATAATCAAAGGATTCCAAAGCCAGAAGCATCACTTTTCACCGTGCATCAAGCAACTAGTGCGGAAAAAAATGATGACAACTCCAACTGCAGTTCACATACGTCAAGCGGTTTCACATTGTGGGAAGAGTCTGACATTAAAAAGGGAAAGACAGGGAAAGAGAATAATGTTGGCGAGAAGCCCATTATAGGAGTGGCAGATTCTGCTGCTAAGATGGGGCAGTGGGCATTGACGGAGCGAACATCTCAATCGTTTTCTAACAATCGTCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAAccttttttctcaagagagaaTCCTCGAATACTCAAAGAGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTGCTGATCAAAAGCCAAACACACCGAGATCAAAACATTCTGCAACAGAGCAGAGGAGAAGAAGCAAAATTAATGACAGGTTTCAGATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTTATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGACCGACCAGCAGAAAGTTTTCAATCTCGTGGCACAAACAGTGGGCCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAACAccaccatctccccaacaattcATGGGGGCGCTCATAGTCTAGAATCTGGCTTGAACACACCAACTGCCTTCAAGACAATGGATCATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCCTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGCGGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACACAATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTGAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGCTGGATACACTTACACAAGCCTTGCAGAGTTCAGGAGTGGATTTGTCACAAGCTAACATTTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAGCCTCAGACCAAACGTACCGATGTCAATGTGTGTTTCTAAGGTATATTTGCTTTAA 1608 0.4192 MELPQSRPCGAEGRKPTHDFLSLYSNQTGEQDPRPSAQASYLKTHDFLRPLEQVETKSDTKEEATDEISSVVQPPLATPASVEHILPGGIGTYSISHINSYVNNNQRIPKPEASLFTVHQATSAEKNDDNSNCSSHTSSGFTLWEESDIKKGKTGKENNVGEKPIIGVADSAAKMGQWALTERTSQSFSNNRHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNTQRGELRVRVDGKSADQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWRNNDRPAESFQSRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHSLESGLNTPTAFKTMDHQSGIMNKALPIPISSQPNFFTSSQIGGSGGAVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQANISVQIELGKQASLRPNVPMSMCVSKVYLL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03784 535 Pfam Helix-loop-helix DNA-binding domain 265 314 IPR011598 GO:0046983
Tsu04g03784 535 MobiDBLite consensus disorder prediction 183 210 - -
Tsu04g03784 535 MobiDBLite consensus disorder prediction 1 38 - -
Tsu04g03784 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 335 IPR036638 GO:0046983
Tsu04g03784 535 MobiDBLite consensus disorder prediction 334 359 - -
Tsu04g03784 535 MobiDBLite consensus disorder prediction 234 279 - -
Tsu04g03784 535 PANTHER TRANSCRIPTION FACTOR BIM1 1 527 - -
Tsu04g03784 535 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 527 IPR044295 GO:0003700|GO:0006351|GO:0046983
Tsu04g03784 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Tsu04g03784 535 CDD bHLH_AtBIM_like 262 338 - -
Tsu04g03784 535 MobiDBLite consensus disorder prediction 20 38 - -
Tsu04g03784 535 MobiDBLite consensus disorder prediction 242 279 - -
Tsu04g03784 535 SMART finulus 269 319 IPR011598 GO:0046983
Tsu04g03784 535 MobiDBLite consensus disorder prediction 342 359 - -
Tsu04g03784 535 Gene3D - 260 335 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03784 Tsu-Chr4 46760790 46768688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03784 1 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.858 5.14e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g03784 HLH 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03784 - - gmx:100808016 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03784 04 46760790 46768688 Tsu04g03784 04 46760790 46768688 ECH