Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03774 ATGGGGAGAGGAAGAGTGCAATTGAAGAGGATTGAGAACAAGATCAATAGACAAGTAACTTTTTCAAAGAGAAGATCAGGTTTGTTGAAGAAAGCACATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTAATAGTTTTCTCTACTAAAGGAAAGCTTTATGATTACTCTAGTGATCCTTgTATGGAAAGAATTCTCGAACGATATGAAAGATATTCTTATACGGAGAGGCAGCTTGTTACAAATGATCAGTCACCAAATGAAAATTGGGTTCTAGAACATGCAAAACTCAAGGCAAGAATGGAAGTACTTCAAAGAAATCAAAGGAATTATATGGGAGAGGATTTGGATGGCTTAAGTCTCAAAGAGCTTCAGAGTTTGGAACAACAACTTGATTCCTCTCTCAAACACATTAGAACACGAAAgAACCAAGTCATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCGCTCCAAGAACACAACAATTTGCTTTCCAAGAAGGTAATGGCTTCTTTTTCtgttcttccttttttttttttgatttag 558 0.3459 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYDYSSDPCMERILERYERYSYTERQLVTNDQSPNENWVLEHAKLKARMEVLQRNQRNYMGEDLDGLSLKELQSLEQQLDSSLKHIRTRKNQVMYESISELQKKDKALQEHNNLLSKKVMASFSVLPFFFLI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03774 185 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Tsu04g03774 185 Coils Coil 88 115 - -
Tsu04g03774 185 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g03774 185 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 173 - -
Tsu04g03774 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu04g03774 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu04g03774 185 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Tsu04g03774 185 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g03774 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g03774 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu04g03774 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g03774 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g03774 185 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 173 - -
Tsu04g03774 185 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu04g03774 185 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03774 Tsu-Chr4 46672144 46677733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03774 1 179 MADS-box Gene Family AT1G26310 65.193 7.33e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu04g03774 K-box 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03774 K09264 - gmx:100816836 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02291 06 29040227 29047693 Tsu04g03774 04 46672144 46677733 ECH
Tsu04g03774 04 46672144 46677733 Tsu04g03774 04 46672144 46677733 ECH