Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03773 atgGGAAGAGGGAGAGTTGAATTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCAAAGAGAAGAAATGGTGTACTAAAAAAAGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGAAAGCTCTATGAATTCAGCAGCACCTCCTGCATGACGAAAACAGTGGAGAAATACCACAAGTACAGCTACAATGAACTGCAGACCAACCAATCAGCCAATGCCACTCAGAATTACCAGGACTATGAGAGATTAAAAGCCAATGTAGAAATCTTACAACGTTCCCAAAGGAATCTCCTTGGGGAAGATATTGCACAAATGAATACAACTGAGCTTGAGCAGCTTGAAAATCAACTGGAGGCAGCACTTATGAATATAAGATCAACAAAGaCTCAATTCATGCTTGATCAACTCGCCGATCTTCACAATCGGGAAACACAgcttgttgaaaaaaataatgctCTAAGAAATAAGCTTGAAGAAACTGATCATAACTCACAAGTTCCAGATAGAATGTTGGCGGTTGGGTCTAACTTTCCTCCTCAATCACACAGATTTTCCCACCATGTGGGAGTGAATTCCAACTTGCAATTTGGataCAATCCAATGGATTCTATGATGTAA 657 0.3805 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMTKTVEKYHKYSYNELQTNQSANATQNYQDYERLKANVEILQRSQRNLLGEDIAQMNTTELEQLENQLEAALMNIRSTKTQFMLDQLADLHNRETQLVEKNNALRNKLEETDHNSQVPDRMLAVGSNFPPQSHRFSHHVGVNSNLQFGYNPMDSMM 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03773 218 Coils Coil 93 113 - -
Tsu04g03773 218 Pfam K-box region 81 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g03773 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu04g03773 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu04g03773 218 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Tsu04g03773 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g03773 218 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Tsu04g03773 218 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 213 - -
Tsu04g03773 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu04g03773 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g03773 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g03773 218 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g03773 218 Coils Coil 116 143 - -
Tsu04g03773 218 Coils Coil 149 169 - -
Tsu04g03773 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Tsu04g03773 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu04g03773 218 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03773 Tsu-Chr4 46650895 46662427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03773 1 170 MADS-box Gene Family AT2G03710 66.860 3.36e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu04g03773 K-box 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03773 K09264 - gmx:100797819 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03773 04 46650895 46662427 Tsu04g03773 04 46650895 46662427 ECH