Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03772 ATGGAATCTTGGAGTTATGTCTCTAATGAGAATAATCAAGGTTCTGAAGAAATGggtttttgtgaaattttaggGAAACAATTTTCagatgatttcaatttcattgGAAATGTTTCAAGTAAGAAACTTGATGATAAATTTGGTGAGCCAAATGAATTGTCTATAAAAGGGGAGAACAATTTCAagctttcaaattcaaactctaTGGTGGAATCTAATGGTTGGGATTCTCATTCTCTCATTGATTTGAAGCTAGGACATTTTGGTGATCATAGAGATGCTATTAGTATTGGTGCTGCATTTTCCAAAGGAGGAGCTATTATGTCTTCTTGTGAATCATCAACACCTCCAAAGAGAGTTAGAGTGCATTCAATGACTGCATACTGTCAAGTTTATGGATGTAACAAGGATCTTAGTTCTTGTAAAGACTATCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACACCCATAGTCATAGTGAATGGAATTGAGCAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGTCTGAATTTGATGATGGTAAGCGTAGTTGCCGGAAACGACTTGCAGGCCATAATGAGCGTCGAAGGAAACCACAAGTAGGCGTTCACTCTGCAAATTCCGCGAGATTGTTTCAGCCATGTGGtgATATCATATTTCAGGCAACCAAGCCACCACCGGCATCTTTTATCTGTCCAGAAGTGTTGCCAAATGGTTTCTGGAGACCTATGAAAGCAGAATATGAAACCGGCTTTATGCATCTTTCTTCTGTACCTGTTACCAATGGACATCCTCAACAAAGATCTTCATTTGCTTCGTACAACGGAAAACAATTTCCCTTTCTTTATGAAAATGTTGCCACATCCACTACAGGCAGCATGTTTGGTGAAAACAATAGCCATTATGCGCATGTCGTTGGAGACACCTATTTAGGAAGTGGAGAATTCAAGGTTTTTCATACACCATCAACCGTTCGAGGATTATCTGGAAGCTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAAGAACACTTCAAGCCAATCATCGGGAATTCCCTTTGATCACCCTTTGGTTATTCCAAGCAACAATGACCATCTCTACAGCATAAGATCACAGACGACTTCCTCAAACCGAGTTTCTGATAGATTTCCATCAGAGTTAAATCCTCCATATGGAAATCATCTCAGTCCTATACTGATATCAGACGATAATGATATTGTGAACTTTGAAATTGCAGATGAGATATTCCAAGATTCAGATTTTGTGAATGCTAAAGACCGTCTTTCATGTGAAGATGATGCAACCATTGACTTACTACGCCTGTCGACACAGCTTCAGCGAGTTGAGCATCACAGACAATCTTTTCAGGTGAAGAATGAGAGTGATTCTTCTTGCACTCTCCGGATTACTTAA 1434 0.3801 MESWSYVSNENNQGSEEMGFCEILGKQFSDDFNFIGNVSSKKLDDKFGEPNELSIKGENNFKLSNSNSMVESNGWDSHSLIDLKLGHFGDHRDAISIGAAFSKGGAIMSSCESSTPPKRVRVHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQVGVHSANSARLFQPCGDIIFQATKPPPASFICPEVLPNGFWRPMKAEYETGFMHLSSVPVTNGHPQQRSSFASYNGKQFPFLYENVATSTTGSMFGENNSHYAHVVGDTYLGSGEFKVFHTPSTVRGLSGSSDSCALSLLSSQSKNTSSQSSGIPFDHPLVIPSNNDHLYSIRSQTTSSNRVSDRFPSELNPPYGNHLSPILISDDNDIVNFEIADEIFQDSDFVNAKDRLSCEDDATIDLLRLSTQLQRVEHHRQSFQVKNESDSSCTLRIT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03772 477 PANTHER 1 PROTEIN, PUTATIVE-RELATED 11 477 - -
Tsu04g03772 477 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 477 IPR044817 GO:0003677
Tsu04g03772 477 Gene3D - 125 190 IPR036893 GO:0003677|GO:0005634
Tsu04g03772 477 Pfam SBP domain 129 202 IPR004333 GO:0003677
Tsu04g03772 477 ProSiteProfiles Zinc finger SBP-type profile. 126 203 IPR004333 GO:0003677
Tsu04g03772 477 SUPERFAMILY SBT domain 127 207 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03772 Tsu-Chr4 46633019 46636299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03772 81 241 SBP-box Gene Family AT1G69170 51.497 1.24e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu04g03772 SBP 9.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03772 - - gmx:100817547 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03772 04 46633019 46636299 Tsu04g03772 04 46633019 46636299 ECH