Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03771 ATGCGATTACTCAGATTGTTTTCGTCTCAGACACATGTTGAGGTTGATTTAGATTTGGGATATGGTTTGAAGATATGCAAGGCTGTAACACAGGAGGAGTTTGAGAAAGTAAACAAAGAGGTGTTTGAGAAGTGTGAAAGGCTAATATACCAATGCTTGCAAGATGCAAAGGTAGAAGTTGAGAACATAAAGGATGCTGTAATATACCAAAGGTTGACAGTTATTGTTTCTAAAAGGATGCCTGGATCTCAACAATCTGACATTCCTGATATTGAAGCAAGAATCACAAAGCTTGCATATGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGGCGATCAATGGTGACATATCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTTGAATCTTCTATATCTGGTTTGTCGGGATTGTATACTGTAGTTATAAAAGCTGCTGGAGCTAGCAGAAGGGTATTTCAACTGCTGGACCGTGTCTCATCCATGCCTAAGTCGGGAGATAGTGATCAAGATGGAGAAGTGGAACTAGATGATGTATGGTTTTCCTATCCATCACGCCCCAATCAGACGGTGCTCAAGTGGAAATATCACAAGACTTTTGTTGGAGAGCGAGGCATAAGGCTTTCAGGAGGACAGAAACAGAGAATAGCAATTGCTAGAGCCTTGCTTACAGACCCGAAAATTCTCCTTCTGGATGAAGCCACCAGTGCCTTAGTTGCTGAAAGTGAATACTTAGTGCAGGATGCTATGGATTCTATCATGAAGGGGAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACCGTTGCAGGTGTTTCTGATGATCAAATAGCCGAGAGTGGTAGTCACAATGAGCTTCTTGACAAGAATGGTGTTTATACTGCATTAGTCAGGAGACAACTACATACAACAAAAACCGAAATCTAA 972 0.4033 MRLLRLFSSQTHVEVDLDLGYGLKICKAVTQEEFEKVNKEVFEKCERLIYQCLQDAKVEVENIKDAVIYQRLTVIVSKRMPGSQQSDIPDIEARITKLAYASTLSVIVVVIYGANLAINGDISSGDLTSFILYSLSVESSISGLSGLYTVVIKAAGASRRVFQLLDRVSSMPKSGDSDQDGEVELDDVWFSYPSRPNQTVLKWKYHKTFVGERGIRLSGGQKQRIAIARALLTDPKILLLDEATSALVAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAGVSDDQIAESGSHNELLDKNGVYTALVRRQLHTTKTEI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03771 323 SUPERFAMILY Actin-like ATPase domain 6 67 IPR043129 -
Tsu04g03771 323 Gene3D - 181 202 IPR027417 -
Tsu04g03771 323 Gene3D - 207 320 IPR027417 -
Tsu04g03771 323 SUPERFAMILY ABC transporter transmembrane region 101 167 IPR036640 GO:0005524|GO:0016021
Tsu04g03771 323 Pfam ABC transporter 204 245 IPR003439 GO:0005524
Tsu04g03771 323 Gene3D ABC transporter type 1, transmembrane domain 101 180 IPR036640 GO:0005524|GO:0016021
Tsu04g03771 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 315 IPR027417 -
Tsu04g03771 323 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 101 153 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g03771 323 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 93 314 IPR003439 GO:0005524
Tsu04g03771 323 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524
Tsu04g03771 323 Gene3D - 45 67 - -
Tsu04g03771 323 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 98 202 - -
Tsu04g03771 323 Gene3D Actin; Chain A, domain 4 7 44 - -
Tsu04g03771 323 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 206 318 IPR039421 -
Tsu04g03771 323 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 98 202 IPR039421 -
Tsu04g03771 323 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 206 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03771 Tsu-Chr4 46630311 46632066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03771 206 318 Calmodulin-binding Proteins AT2G36910 55.652 1.43e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03771 - - peq:110022536 293.508