Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03767 ATGTTACTGCTGCAGCAAAAATTTGGTGGGAAGATAATTGATATAGTCTCAGGAGATATAAGAACTCCTGAGGACAAAGATGCAGCATTAGATGCTGTCAAGAGCACCATACTAGAAATCCTTATCATCGTTGTCCTCGGTTCAATTTGCTCAGCGCTTCGAGCATGGCTTTTTTATTCTGCCAGTGAAAGGGTTGTTGCACGCCTGAGGAAGGATTTGTTCAGTCACCTTGTAAACCAGGAAATAGCTTTCTTTGATGTTACACGAACCGGGGAACTTTTAAGTAGGTTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCAGAGGCCTTGCGAAACTTGTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTATTGGCTTTGGTTGTTGTACCTGTTATTTCTGTCGCTGTTCGTAAATTCGGTCGTTTCCTGCGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCACTATCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACGGTTAGATCTTTTGCTCAGGAAGATTATGAAATAGCACGATACTCTGAGAAAGTTAATGAGACTTTATCGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACGATCAAGGGTGCCATGACCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTTGGATCTTCTATATCTGGTTTGTCGGGATTGTATACTACAGTTATGAAAGCCGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTGCCTCATCCATGCCTAAGGCGGGAGATAAATGTCCTCTGGGTGATCATGATGGGGAAGTGGAACTAGATGATGTATGGTTTTCTTATCCATCACGCCCTAATCATATGGTGCTCAAGGGTATTAATATAAAACTGCAACCTGGCTCAAAGGTTGCTCTTGTCGGTCCAAGCGGTGGCGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGGTCAATGGTGTTCCTCTGGTAGAAATATCACACAAACATTTACACAGAAAgATCAGTATAGTGAGTCAGGAGCCTACACTTTTCAACTGTTCCATAGAGGAAAACATAGCTTATGGATTTGATGGCAAAATTGACGACGCTGATATTGAAAATGCAGCTAAAATGGCCAACGCGCATGaatttatatcaaattttcCTGAAAAATACAAGACACATGTTGGAGAGCGAGGCATAAGGCTTTCAGGAGGACAGAAACAAAGAATAGCAATTGCTAGAGCGTTACTTATGGACCCGAAAATTCTCCTACTTGATGAAGCCACTAGTGCTTTAGATGCTGAAAGCGAATACTTAGTGCAGGATGCTATGGATTCTATCATGAAGGGAAGGACAGTTTTAGTCATTGCTCATAGGTTATCGACTGTTAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTCGAGAGTGGTACTCATGACGAGCTTCTCGACAAGAATGGTGTTTATACTGCATTAGTCAAGAGACAActacaaacaacaacaacaaaaactgaAATCTAA 1686 0.3986 MLLLQQKFGGKIIDIVSGDIRTPEDKDAALDAVKSTILEILIIVVLGSICSALRAWLFYSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALVVVPVISVAVRKFGRFLRELSHKTQAAAALSSSIAEESFGAIRTVRSFAQEDYEIARYSEKVNETLSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMTSGDLTSFILYSLSVGSSISGLSGLYTTVMKAAGASRRVFQLLDRASSMPKAGDKCPLGDHDGEVELDDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILVNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKIDDADIENAAKMANAHEFISNFPEKYKTHVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLDKNGVYTALVKRQLQTTTTKTEI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03767 561 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 555 - -
Tsu04g03767 561 PIRSF ABC_prm/ATPase_B 3 561 - -
Tsu04g03767 561 Gene3D - 311 558 IPR027417 -
Tsu04g03767 561 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 279 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g03767 561 CDD ABC_6TM_AtABCB27_like 7 287 - -
Tsu04g03767 561 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 313 550 IPR003439 GO:0005524
Tsu04g03767 561 SUPERFAMILY ABC transporter transmembrane region 4 293 IPR036640 GO:0005524|GO:0016021
Tsu04g03767 561 ProSitePatterns ABC transporters family signature. 453 467 IPR017871 GO:0005524
Tsu04g03767 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 551 IPR027417 -
Tsu04g03767 561 Pfam ABC transporter transmembrane region 3 261 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g03767 561 SMART AAA_5 340 534 IPR003593 -
Tsu04g03767 561 Pfam ABC transporter 331 481 IPR003439 GO:0005524
Tsu04g03767 561 CDD ABC_MTABC3_MDL1_MDL2 313 551 - -
Tsu04g03767 561 Gene3D ABC transporter type 1, transmembrane domain 40 310 IPR036640 GO:0005524|GO:0016021
Tsu04g03767 561 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 555 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03767 Tsu-Chr4 46599805 46604203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03767 63 556 Calmodulin-binding Proteins AT2G36910 36.779 1.41e-94 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03767 - - var:108320153 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03767 04 46599805 46604203 Tsu04g03767 04 46599805 46604203 ECH