Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03760 ATGGGTCCGGATGATAAAAGCCAACAGCTGAAAGCACTTATTCAATTCCAGAAGTTTCAAGAGCTTCTCTCGATTGAAGGAAGCCCTCCCGCTGAGAAAGTTATTGAGAGATTTATTCAATGTGGTGCTGTTCCTCGTTTTGTTAAATTTCTATCCATGCATGATATCCCTCAAATTCAGtaTATGGCTGCTTGGGTACTCGCATACATAGCATCCGGAACTTCTAAGAACATTGAGGTGGTAATTGATCATGGAGCTGTGCCGATATTTATCAAGCTACTTAGTTCACCTAGTGATCCTGTTCGGGAACAGGCTGCGTGGGCATTGGGAAATGTTGCCAGTGATTCGCCTAGGTACCGTGATCTTGTTCTCAGTCATGGTGCCTTGATCCCACTGTTATCCCAGTTGAATGAGCAAGCAAAGCTTTCTACGCAAAGAGATGCCATGTGGACCCTTTTAAACTTTCTCAAGGGCAAGCCACAACCCCAATTTGAGCAGGTGAAGCCAGTCCTTCCCGCTCTCCAGCGTTTGCTTTtttcagatgatgaagaagtcCTGACAGAGACATGTTGGGCACTCTCATTTCTTTCTGATGGACCAAGTGACAAAATCCAAGCTGTGATTGACGCAGGTGTATGCGGCAGACTGGTGCAGCTCCTTCTGCACCCATCTCCTTCAGTGTTGATTCCTGCACTTCGTACCGTGGGAAATATTGTAACTGGAGACCATATGCAGACTCAGGTTGTTATCGATCATGGTTCACTCCCATGCCTTTTGAGCCTGTTGACCCATAATCACAACAGAAGTATTCAAATAGAGGCTTGTTGGACTATAGCAAACATCACAGCTGGAAACACAGAGCAGATACAGGCTGTTATTGAAGTTGGTCTAATTGCCTCCCTAGTCAATCTCTTTCAAAATGCCGAGTTTGACATTAAAAAAGAAGTTGTATGGGCATTCTATAATGCTTCATCCGGCGGTACCAATGAGCAAATCAAGTACTTGGTGAGCCAGAGTTGCATTAAGCCTCTGTGTGATTTGCTTGTTTGCCATGATCCAAAAATTGTTACTATCTGTTTAGATGGTCTTGCGAATTTTCTGAAGGTTGGAAAAGCAGAGAAAAGCTTTGGTAACACGGGAGATGATGTCAACTTATATGCTCAGATGATAGATGATGCTGAGGGATTGgaaaagattgaaaaattgCAGTATCATGACAACAATGAAATTTATGAAAAGGCTGTTAAAATTCTCAAAACATATTATTTGTCGGAAGACGGAGATGAGGATGCTATCTCCAGGCAATGA 1308 0.422 MGPDDKSQQLKALIQFQKFQELLSIEGSPPAEKVIERFIQCGAVPRFVKFLSMHDIPQIQYMAAWVLAYIASGTSKNIEVVIDHGAVPIFIKLLSSPSDPVREQAAWALGNVASDSPRYRDLVLSHGALIPLLSQLNEQAKLSTQRDAMWTLLNFLKGKPQPQFEQVKPVLPALQRLLFSDDEEVLTETCWALSFLSDGPSDKIQAVIDAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDHMQTQVVIDHGSLPCLLSLLTHNHNRSIQIEACWTIANITAGNTEQIQAVIEVGLIASLVNLFQNAEFDIKKEVVWAFYNASSGGTNEQIKYLVSQSCIKPLCDLLVCHDPKIVTICLDGLANFLKVGKAEKSFGNTGDDVNLYAQMIDDAEGLEKIEKLQYHDNNEIYEKAVKILKTYYLSEDGDEDAISRQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03760 435 Pfam Atypical Arm repeat 384 430 IPR032413 -
Tsu04g03760 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 85 127 IPR000225 GO:0005515
Tsu04g03760 435 SUPERFAMILY ARM repeat 16 424 IPR016024 -
Tsu04g03760 435 Pfam HEAT-like repeat 145 195 - -
Tsu04g03760 435 PIRSF Importin_alpha 1 435 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tsu04g03760 435 Gene3D - 2 423 IPR011989 -
Tsu04g03760 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 253 296 IPR000225 GO:0005515
Tsu04g03760 435 Pfam Armadillo/beta-catenin-like repeat 39 72 IPR000225 GO:0005515
Tsu04g03760 435 Pfam Armadillo/beta-catenin-like repeat 285 324 IPR000225 GO:0005515
Tsu04g03760 435 Pfam Armadillo/beta-catenin-like repeat 328 365 IPR000225 GO:0005515
Tsu04g03760 435 Pfam Armadillo/beta-catenin-like repeat 75 114 IPR000225 GO:0005515
Tsu04g03760 435 Pfam Armadillo/beta-catenin-like repeat 244 283 IPR000225 GO:0005515
Tsu04g03760 435 Pfam Armadillo/beta-catenin-like repeat 201 239 IPR000225 GO:0005515
Tsu04g03760 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 42 85 IPR000225 GO:0005515
Tsu04g03760 435 PANTHER IMPORTIN SUBUNIT ALPHA 5 429 - -
Tsu04g03760 435 SMART arm_5 242 283 IPR000225 GO:0005515
Tsu04g03760 435 SMART arm_5 115 157 IPR000225 GO:0005515
Tsu04g03760 435 SMART arm_5 285 325 IPR000225 GO:0005515
Tsu04g03760 435 SMART arm_5 159 198 IPR000225 GO:0005515
Tsu04g03760 435 SMART arm_5 200 240 IPR000225 GO:0005515
Tsu04g03760 435 SMART arm_5 328 368 IPR000225 GO:0005515
Tsu04g03760 435 SMART arm_5 30 72 IPR000225 GO:0005515
Tsu04g03760 435 SMART arm_5 74 114 IPR000225 GO:0005515
Tsu04g03760 435 PANTHER IMPORTIN ALPHA 5 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03760 Tsu-Chr4 46542042 46544140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03760 57 308 U-box Gene Family AT3G46510 22.925 1.72e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03760 K15042 - gmx:100808498 642.499