Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03759 ATGGCAAAATCCGTCTCCCCAAACGCCATTTCCACCTTACTTTCAAATCCATCTCCTGATTCTTCATCAGATCTTCCTGAAATCATTATTCAAATTCTCGATCTCAAACAAAACGGCAACAGATACATGTGTTTTGTTAGTGACggaaaaatgaaattaagaGCAATACTACCTTCAAATCAGTTTTCAGATGTACTTTCTGGAAAGATTCAGAACCTTGGTCTCATTCGGATTGTTGATTATACTCTTAACGACATTCCGAACAAGCCTGATAAGTATTTAATTGTTACAAAGTGTGAAGCGGTTTCTCCTGCGCTTGAAATGGAGATAAAGAGTGAACCAACTGGTATCACTTTGAAGCCAAAGGAAGATGTTGTAGTCAAGACTGAAAGTGCTGCTGGTATTGTTCTAAAGCCGAAGCAGGATGTGGTTTCAAAATCTGCTGCTCAGATTGTGCGTGAGCAACATGCAAATTCTGCTCCTGCGAGACTAGCTATGACCCGTAGAGTGCGTCCTCTTGTATCTTTGAATCCTTATATGGGGGGTTGGACAATCAAGGTCAGTGTTACTAGCAAAGGAACAATGCGTACCTATAAGAATGCTAGAGGAGAAGGTTGTGTATTCAATGTTGAATTGACTGATGAAGATGGTACTCAGATTCAAGCAACTATGTTTAATGATGCTGCAAGGAagttttttgacaaatttgttATGGGAAAGGTTTATTATATTTCAAAGGGTACTTTGAAAGTTGCTAACAAACAGTTTAAAACTGTGGCAAATGATTATGAGATGACATTGAATGAGAATTCTGAGGTGGAAGAGGTTCCTGAAGAAGCTGGGTTTGTTCCAGagacaaaattcaattttgtccCAATTGATCAATTGGGTCCTCATGTCAATAAGCCTGACCTTGTTGATGTTGTTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATCAGAAGGAAGAGCAACAATGAGAGTGTTGCAAAGCGTGACATTACTATTGCTGATGAATCCAAGAAGACAGTTGTTGTGTCTTTGTGGGGTGACCTTGCAACTAACATAGGACAAGAGTTACTTGACATGGCTGATAAATCCCCAGTAGTTGCTATCAAATCCCTCAAGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTTTAGTTCTGATTGATCCAGAAGTACCTGAAGCTCAGAAGCTCAGATCCTGGTATACCAATGTTCACTAG 1245 0.3839 MAKSVSPNAISTLLSNPSPDSSSDLPEIIIQILDLKQNGNRYMCFVSDGKMKLRAILPSNQFSDVLSGKIQNLGLIRIVDYTLNDIPNKPDKYLIVTKCEAVSPALEMEIKSEPTGITLKPKEDVVVKTESAAGIVLKPKQDVVSKSAAQIVREQHANSAPARLAMTRRVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVMGKVYYISKGTLKVANKQFKTVANDYEMTLNENSEVEEVPEEAGFVPETKFNFVPIDQLGPHVNKPDLVDVVGVVKNVSSTMSIRRKSNNESVAKRDITIADESKKTVVVSLWGDLATNIGQELLDMADKSPVVAIKSLKVGDFQGVSLSAISKSLVLIDPEVPEAQKLRSWYTNVH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03759 414 Pfam Replication protein A OB domain 299 396 IPR031657 -
Tsu04g03759 414 SUPERFAMILY Nucleic acid-binding proteins 171 280 IPR012340 -
Tsu04g03759 414 Gene3D - 169 278 IPR012340 -
Tsu04g03759 414 CDD RPA1_DBD_A 172 275 - -
Tsu04g03759 414 Pfam OB-fold nucleic acid binding domain 184 264 IPR004365 GO:0003676
Tsu04g03759 414 Gene3D - 4 117 IPR012340 -
Tsu04g03759 414 CDD RPA1_DBD_B 312 410 - -
Tsu04g03759 414 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu04g03759 414 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Tsu04g03759 414 Gene3D - 283 414 IPR012340 -
Tsu04g03759 414 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tsu04g03759 414 SUPERFAMILY Nucleic acid-binding proteins 288 411 IPR012340 -
Tsu04g03759 414 PANTHER REPLICATION FACTOR A 1, RFA1 5 411 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu04g03759 414 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g03759 414 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03759 Tsu-Chr4 46535419 46537716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03759 1 410 Core DNA Replication Machinery Family AT5G08020 67.233 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03759 K07466 - gmx:100777091 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03759 04 46535419 46537716 Tsu04g03759 04 46535419 46537716 ECH