Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03755 ATGGCTTTCTTTGGGAAACTTGGGAATATTCTAAGACAAACTGCTAACAGGACTATTGTTTCCGAATTGCGTTCGTCTCCATCTGCTTTCCAGGCTATAAGATGCATGTGTTCTGCTCCAAACACAAAGCTGTTTGTCGGGGGTATTTCCTATTCAACCGATGAACAAAGTTTGAGGGATGCTTTTTCAAGATATGGTGAAGTTATTGATGCAAGGATAATTAATGATCGTGAAACTGGTCAATCTAGAGGATTTGGCTTTGTCACATTCAATTCAGTTGAGGAGGCATCTAGTGCCATTCAGGCCTTGGATAGTCAGGAGCTTCATGGTCGTCGGGTCAGAGTTAATTATGCTAATGAAAGGCCCCGTACATATGGCGGCGGTGGCGGTTCTTATGGCAATGCATCATATGGTGGGGGAGGATATGGAGGCCCTCAATATGGTGGTCCTTCAAGGGGCGGTGGCTATGGTGGAAATGTAGATGGAGGTTATGGGGGTGGTGGATATGGCGGAGGCAGCTATGTGCCAGGTGGTAATTATGGAGGTAGTGGTGCTACCAATAACTATTCTGCTCCTAACAGTTTTGAAACTAACAATACTGGTGGGGGGTTAGAATATGGCAGCAGCGGTGATATAAATGAGGATTTAGGATTTGGTGTTGGGGACTCGACCAAAGGTAATTATAGGGACGATGGTGATGATACCGATGATTTTGCCAAAAGGGCCTGA 729 0.454 MAFFGKLGNILRQTANRTIVSELRSSPSAFQAIRCMCSAPNTKLFVGGISYSTDEQSLRDAFSRYGEVIDARIINDRETGQSRGFGFVTFNSVEEASSAIQALDSQELHGRRVRVNYANERPRTYGGGGGSYGNASYGGGGYGGPQYGGPSRGGGYGGNVDGGYGGGGYGGGSYVPGGNYGGSGATNNYSAPNSFETNNTGGGLEYGSSGDINEDLGFGVGDSTKGNYRDDGDDTDDFAKRA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03755 242 CDD RRM_HP0827_like 43 119 - -
Tsu04g03755 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Tsu04g03755 242 SUPERFAMILY RNA-binding domain, RBD 39 149 IPR035979 GO:0003676
Tsu04g03755 242 SMART rrm1_1 43 116 IPR000504 GO:0003723
Tsu04g03755 242 Gene3D - 13 138 IPR012677 -
Tsu04g03755 242 PRINTS Eggshell protein signature 38 54 - -
Tsu04g03755 242 PRINTS Eggshell protein signature 177 195 - -
Tsu04g03755 242 PRINTS Eggshell protein signature 126 141 - -
Tsu04g03755 242 PRINTS Eggshell protein signature 152 162 - -
Tsu04g03755 242 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 239 - -
Tsu04g03755 242 MobiDBLite consensus disorder prediction 200 242 - -
Tsu04g03755 242 MobiDBLite consensus disorder prediction 226 242 - -
Tsu04g03755 242 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 239 - -
Tsu04g03755 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03755 Tsu-Chr4 46515592 46518155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03755 44 176 Eukaryotic Initiation Factors Gene Family AT4G34110 27.500 6.95e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03755 K12741 - gmx:100799124 214.927