Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g03739 | ATGgaagaaaaatatcaaattcaAGAATTCAAACATGCTTGCAAATTCTGTAACAAAAGTTTCCCTTGTGGTAGATCTTTAGGTGGTCACATGAGGTCTCATATCAACAACTTATCATCTGAAAAAACAGAACAGAAAGAAAAAGTttcaatcaaaatcaacaatGGAAGTAGCATTGATCATTCTGAAGCTGCTGCAAATAATGGTAGCTATGGTTTAAGAGAGAATCCAAAGAAGACATGGAGAAAGAGAGTTGCTGAATCAAGTGAAGATAGTTATGTGTTTGATAAATTCTGTAAAGAGTGTGGAAAATGTTTTCAATCATGGAAAGCTTTGTTTGGTCATATGAAGTGTCATTCTGATCAGAAAGATAGAGTTTCTGATAGTTTGGAAGATCAAGATTCATGGACTAATAATGCTAAAGATGTTCAATCTGATAATGAAATCACTGCtccaagaagaaaaagaagatcaAAGAGAACAAGAACAAGGTATAATAACATGGTAGGTTCTTCCGCTGCTGCAACTGCAACAACTTCTTCTTCTGTTTCTGAAGTTGAACATGAGCAAGAAGAAGTTGCTATAAGCTTGATTATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTTTTGCTGAATCATCTGATAATAATTCTGTTTACTTCGAAGCTCGATCTTCCGTTCGAACTAATCTTGTTACTAAATTCGATGCGAAAAACAAGAATTCTACTACTGCTGCTGCTGCAACTACTATCAATATTGCAAAGTTGATGAAGCAAAGTGAGAAGAACAAGTGTGAGTTAGGAAATtctgtttacaaaaaattaaacttcaaAGGAAAAAGTTTGGAGATTTTGGACACTGGAAAAGATTTCAAGATGAACAAAACTGGAGTTTCCATTAAAGGGTTTCTGAAATCAACAAAATCTGAGCTTGATTATTTGTCTACATTGGAAGATTCAGAAGTTGAAAATGGGAAAAGCAGAGTCAATGGAACAGAATCAGCTATGAACATGCTTGATCATGAAGATGAATTCATCAAGAATTATACTAAGAGAGGGAAATTTGAGTGTACTACTTGTAACAAAATTTTCCATTCATATCAAGCTCTTGGAGGACATAGAGCTAGTCATAAAAAGACTAAAGGGTGTTTTGCTTCAAAGATTGAGAATAGTGAAAACAGCATTGAATTTGTTGAAACTGATGTATCTCATGAACCAACAACTGAAAGCAAGGTTATGAAGATTAGCGATAACAACATTGAATATGTTCAAAATATGAAGATCAAAGGTCATCATGAGTGTCCAATTTGTTTTAAGGTTTTTCAATCTGGTCAAGCTTTAGGGGGTCATAAAAGATCTCATATGGTTGCTGCTGCTACTGGTTCTGAGAGTAGAGTTTTAGTTCAAGAACAAGTTCCACAGATTAGGGACTTTCTTGATCTTAATCTACCTGCTTCTACTGAAGAAGAAAGTAATAGTCATGCTGATTCTAATAGACCTTGGTGGATTGTTGAAGGAAATCAACAAGAGGCACTTGTAGGGTAG | 1545 | 0.3346 | MEEKYQIQEFKHACKFCNKSFPCGRSLGGHMRSHINNLSSEKTEQKEKVSIKINNGSSIDHSEAAANNGSYGLRENPKKTWRKRVAESSEDSYVFDKFCKECGKCFQSWKALFGHMKCHSDQKDRVSDSLEDQDSWTNNAKDVQSDNEITAPRRKRRSKRTRTRYNNMVGSSAAATATTSSSVSEVEHEQEEVAISLIMLSRDVSPWSGFAESSDNNSVYFEARSSVRTNLVTKFDAKNKNSTTAAAATTINIAKLMKQSEKNKCELGNSVYKKLNFKGKSLEILDTGKDFKMNKTGVSIKGFLKSTKSELDYLSTLEDSEVENGKSRVNGTESAMNMLDHEDEFIKNYTKRGKFECTTCNKIFHSYQALGGHRASHKKTKGCFASKIENSENSIEFVETDVSHEPTTESKVMKISDNNIEYVQNMKIKGHHECPICFKVFQSGQALGGHKRSHMVAAATGSESRVLVQEQVPQIRDFLDLNLPASTEEESNSHADSNRPWWIVEGNQQEALVG | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g03739 | 514 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 434 | 454 | IPR013087 | - | |
| Tsu04g03739 | 514 | MobiDBLite | consensus disorder prediction | 55 | 80 | - | - | |
| Tsu04g03739 | 514 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 514 | - | - | |
| Tsu04g03739 | 514 | Gene3D | Classic Zinc Finger | 9 | 119 | - | - | |
| Tsu04g03739 | 514 | MobiDBLite | consensus disorder prediction | 132 | 146 | - | - | |
| Tsu04g03739 | 514 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Tsu04g03739 | 514 | Pfam | C2H2-type zinc finger | 12 | 34 | - | - | |
| Tsu04g03739 | 514 | Pfam | C2H2-type zinc finger | 431 | 455 | - | - | |
| Tsu04g03739 | 514 | Pfam | C2H2-type zinc finger | 355 | 379 | - | - | |
| Tsu04g03739 | 514 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Tsu04g03739 | 514 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 432 | 454 | IPR013087 | - | |
| Tsu04g03739 | 514 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 514 | - | - | |
| Tsu04g03739 | 514 | SMART | c2h2final6 | 355 | 377 | IPR013087 | - | |
| Tsu04g03739 | 514 | SMART | c2h2final6 | 12 | 34 | IPR013087 | - | |
| Tsu04g03739 | 514 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Tsu04g03739 | 514 | SMART | c2h2final6 | 432 | 454 | IPR013087 | - | |
| Tsu04g03739 | 514 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 377 | IPR036236 | - | |
| Tsu04g03739 | 514 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 34 | IPR013087 | - | |
| Tsu04g03739 | 514 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 357 | 377 | IPR013087 | - | |
| Tsu04g03739 | 514 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Tsu04g03739 | 514 | MobiDBLite | consensus disorder prediction | 164 | 184 | - | - | |
| Tsu04g03739 | 514 | Gene3D | Classic Zinc Finger | 352 | 454 | - | - | |
| Tsu04g03739 | 514 | SUPERFAMILY | beta-beta-alpha zinc fingers | 9 | 37 | IPR036236 | - | |
| Tsu04g03739 | 514 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 12 | 39 | IPR013087 | - | |
| Tsu04g03739 | 514 | MobiDBLite | consensus disorder prediction | 130 | 186 | - | - | |
| Tsu04g03739 | 514 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 355 | 382 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g03739 | Tsu-Chr4 | 46368123 | 46369832 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g03739 | 6 | 239 | C2H2 Transcription Factor Family | AT1G26610 | 40.157 | 4.93e-37 | 140 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Tsu04g03739 | zf-C2H2_6 | 5e-11 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g03739 | - | - | gmx:102666705 | 561.992 |