Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03727 ATGGGTTGTGTGTTTGTGAAGCAAGGGGTGTCTGTGACACCTGCCATTGACCACTCAGTTGACTCGGAGAGGAATAACAGTgtaaagaagaagaataagaagagtGTTGAGTCGTTTGGAGTGACTTGGAGTGAGGTAGGTGAGTCAGGGAGAACCAGTTTGAATGGTGAAACTGGGTCTTTGAGTTTCAGGTTAGGGAATCTCAGTAAGTATGTTGAAGGAGAACAAGCTGCCGCCGGTTGGCCGGCTTGGATCACCTCTGTCGCCGCCGAAGCCATTCAAGGATGGGTTCCTCTCCGCTCTGATGCATTTGAAAAACTTGAcaagATTGGGCAGGGTACATATAGCAGTGTTTTCCGAGCGAAGGAGATAGAGACAGGGAAGATAGTGGCTCTAAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTGAGGTTTATGGCACGAGAAATATTGATTCTTAGAAGGCTTGATCATCCCAATATCATTAAACTGGAAGGCTTGATTACTTCAAGATTGTCTTGTAGCATCTACCTTGTATTTGAGTACATGGAGCATGATGTTACAGGGCTCTTGTCAAAACCAGAAATCAACTTTACTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCACTGTCACTCAAGGGGTGTAATGCACCGGGACATTAAAGGATCAAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTAGCAGATTTTGGATTGGCGAATTTCTGTAACTACGGGAACAAACAGCAGCTAACTAGTCGCGTTGTCACGTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTTCATCTGTGGATATTTGGAGTGTTGGTTGTGTCTTTGCAGAGTTACTAGTTGGGAAGCCTATACTTAAGGGGAGAACAGAGGTAGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCTCCGCCCGACGAATACTGGAAAAAGACCAGACTTCCCCACGCAACTTTGTTCAAGCCACAACAACCATATGATAGTTGCCTAAGAGAAACATTTAAAGATTTTCCTGCAAGCAGCGTAAATCTGTTACAAACTCTTCTTTCTGTTGAACCAAACAAACGCGGAACTGCCTCATCTGCTCTCTCGTCGGAGtatttcaaaacaaaacctTATGCATGTGACCCATCAAGCTTACCAGTATACCCACCTAGCAAAGAAATCGATGCAAAACACGAGGAGGAAACAAAAAGGAAAAAAATTGGCGGGAGAGTTGGTGGACCTGAATCAAGAAGACCATCAAGAAAGCCATCAAGACCGAATAAATTACCCCTAGCACAGGATTTGAAAAGTCAAATTCAAACTACACAAAAGATAGATGATAGATCAATCCACATCCTTAAAGAAGAGAACACTAACATATGTGATGAGGCATCAAAGCCATCCAATGGTAAAGCAGAAGATGCTTCTGATATGAAGAATGCATCTCAGGCAGATGTTCCCTTTCATGGACCATTACAAGTTTCAAAATCAAGTGGATTTGCATGGGCAAAAAGGCGTAAAGATGACACTAATTCAATTAGATCCCACACTCGATCTATTTCTAAAGGACATATATTTAACTCATTAGAAACTTCTACAATAAATTCAAGGGAAGTTTCTGATGATAAtagaaacaatgaaaataagGAAGATTTTGGGGAACGCACCAGCTCAAGAGGCCGTGATCTATTTGAAATTTCTAAGCTAGTAATGCAAAATCAATGGAGTAAGTTTGACCGCCCGGATTCCTTTGATACTTCTGAAGAGTACCACTCACAAGAACTGTCTATGATGGTTTATCATAGAGAAGATTCACTGTCCAGGAGAAGTAACCGGAGTTATCAGGATCAAGGAGAGAAGGTTGAATTTTCAGGGCCTCTAATATCTCAAATGCATACAGTTGACGAGCTCTTAGAAAGACATGAGCGACACATTCGGCATACAGTCCGAAGATCATGGTTTCATAAAGGTAAAAAGCGTGGGAATTAA 2037 0.4065 MGCVFVKQGVSVTPAIDHSVDSERNNSVKKKNKKSVESFGVTWSEVGESGRTSLNGETGSLSFRLGNLSKYVEGEQAAAGWPAWITSVAAEAIQGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDVTGLLSKPEINFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNYGNKQQLTSRVVTLWYRPPELLLGSTDYGSSVDIWSVGCVFAELLVGKPILKGRTEVVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFPASSVNLLQTLLSVEPNKRGTASSALSSEYFKTKPYACDPSSLPVYPPSKEIDAKHEEETKRKKIGGRVGGPESRRPSRKPSRPNKLPLAQDLKSQIQTTQKIDDRSIHILKEENTNICDEASKPSNGKAEDASDMKNASQADVPFHGPLQVSKSSGFAWAKRRKDDTNSIRSHTRSISKGHIFNSLETSTINSREVSDDNRNNENKEDFGERTSSRGRDLFEISKLVMQNQWSKFDRPDSFDTSEEYHSQELSMMVYHREDSLSRRSNRSYQDQGEKVEFSGPLISQMHTVDELLERHERHIRHTVRRSWFHKGKKRGN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03727 678 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 35 671 - -
Tsu04g03727 678 MobiDBLite consensus disorder prediction 447 462 - -
Tsu04g03727 678 MobiDBLite consensus disorder prediction 547 574 - -
Tsu04g03727 678 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Tsu04g03727 678 MobiDBLite consensus disorder prediction 556 574 - -
Tsu04g03727 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Tsu04g03727 678 Gene3D Transferase(Phosphotransferase) domain 1 187 428 - -
Tsu04g03727 678 ProSiteProfiles Protein kinase domain profile. 104 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03727 678 SMART serkin_6 104 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03727 678 CDD STKc_CDK9_like 104 389 - -
Tsu04g03727 678 MobiDBLite consensus disorder prediction 400 464 - -
Tsu04g03727 678 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Tsu04g03727 678 PANTHER CELL DIVISION PROTEIN KINASE 35 671 - -
Tsu04g03727 678 MobiDBLite consensus disorder prediction 408 438 - -
Tsu04g03727 678 SUPERFAMILY Protein kinase-like (PK-like) 98 396 IPR011009 -
Tsu04g03727 678 Pfam Protein kinase domain 104 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03727 Tsu-Chr4 46267067 46270774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03727 96 423 Core Cell Cycle Gene Families AT5G10270 50.568 1.11e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu04g03727 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03727 - - gmx:100816047 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03727 04 46267067 46270774 Tsu04g03727 04 46267067 46270774 ECH