Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03717 ATGGAGATTGAGGAACTTATTGATTTGAATAGCAAAGAGAGTAATTGTGGTGGAAATAATAGCAAGAATGGTGATGGATTCATTGATAGGAGTAAAGTTAGGATTTTGCTTTGTGATAATGATTCCAAGAGTTCAGAAGAGGTTTCTACTCTTCTTTTGAATTGCTCTTATCAGGTTACGTCTGTAAAATCAGCAAGGCAAGTAATTGATGCATTAAATGCGGAAGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAATTAAAAAGGGCATGAAGATGTTGAAATACATAGCACGTGATAAAGAATTGCGCCGAATTCCTATTATAAtGATGTCTGCACAAGACGAGGTATCAATTGTTGTTAAGTGCTTAAGACTTGGAGCAGCAGATTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACACACATGTGGAGACGGAGACGGATGCTTGGACTTGCGGAGAACAACATCTGTAGTTATGATTTTGATATGGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACCTTGATCTCTGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGCCTGTAATTTCAATCCAACAAGAACAAGAGGCCAGTAGTGCcactgctgctgctgctgctgctgttaTTGAGGAGCTTCCATATGCCCGTGCATCAGAATATCAGCCTGATGTACCCGGAATTAGTGATCGGAGAACAGGTTCTTTAGGACAACATCCACCATGCAACAGAGTTACAAATGGTAGCTTTGACGGACATTTTTCATCAGGTCCGAAGAAGAGTGAACTAAGAATTGGAGAGTCATCGGCCTTTCTCACTTATGTCAAAGCTCCAACAAAGAAGAGTAACTTTGAAGAGACTGCTCATGTCGACAATAATGGTACTGCACAAATGAGGGTGGAAGATACGATGAATCAAGCATGTTCTCAACAAGGGGGTAATGACCTTATAAGACATGAAAATGGAGAAACGATTGAAATCCATTCACAAGACGACTTGCCTAATGGAGAAACGATTGAAAGCCATTCACAAGACGACTTACCTAGAAGCAATAGTATCCCCGATTCTTTCTCTGTTGACAGATCATGTACCCCACCTGCATCAATGGAGGTTTCACAGCAAAACAATTACAAGGAAGAATATCCACAGGGGATGGTTAATCCAAGAAATGGAAGTTATGGTTCTCAGCTCGACCAATCGAGCATGCCTGCCCAACATGCTTATCCATATTATACACCAGGAGGTTTTAATCAGGTTATGATGTCATCATCAGCCCAAATGTATCAAAAGAATATTCAGGACCTTCAGAGTCATGTTAGTTCATCTATGATTGCCCAGTACAATCACCTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCGTTCCCGTATTTTCCAATGAGTATTTGTTTACAAACTGGTCAGGTTTCTACAGGCCATTCATGGCCATCATTAGGAAGTTCAACTTCATGTGAAGCAAActtaagaaaagttgataggAGAGAAGCAGCATTAATGAAGTTTAGACAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTGAGAAAGTTGAACGGAATTAACGTGGATCTAAATGGACAACCTGCTTCCACCGACTATGATAACGATGATGAGGAGGAAGGAAGCAATGACGCTCGAGATCCCTCTCCTAAGGATGCTTGA 1794 0.3986 MEIEELIDLNSKESNCGGNNSKNGDGFIDRSKVRILLCDNDSKSSEEVSTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAENNICSYDFDMVASDPSDANTNSTTLISDDTDDRSKRSTNPEPVISIQQEQEASSATAAAAAAVIEELPYARASEYQPDVPGISDRRTGSLGQHPPCNRVTNGSFDGHFSSGPKKSELRIGESSAFLTYVKAPTKKSNFEETAHVDNNGTAQMRVEDTMNQACSQQGGNDLIRHENGETIEIHSQDDLPNGETIESHSQDDLPRSNSIPDSFSVDRSCTPPASMEVSQQNNYKEEYPQGMVNPRNGSYGSQLDQSSMPAQHAYPYYTPGGFNQVMMSSSAQMYQKNIQDLQSHVSSSMIAQYNHLPQCPPHATGMTPFPYFPMSICLQTGQVSTGHSWPSLGSSTSCEANLRKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDNDDEEEGSNDARDPSPKDA 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03717 597 MobiDBLite consensus disorder prediction 361 394 - -
Tsu04g03717 597 MobiDBLite consensus disorder prediction 568 597 - -
Tsu04g03717 597 MobiDBLite consensus disorder prediction 255 270 - -
Tsu04g03717 597 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Tsu04g03717 597 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 350 - -
Tsu04g03717 597 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 351 583 - -
Tsu04g03717 597 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 350 IPR045279 GO:0009736
Tsu04g03717 597 PANTHER TWO-COMPONENT RESPONSE REGULATOR 351 583 IPR045279 GO:0009736
Tsu04g03717 597 SMART REC_2 33 148 IPR001789 GO:0000160
Tsu04g03717 597 MobiDBLite consensus disorder prediction 237 277 - -
Tsu04g03717 597 Pfam CCT motif 518 560 IPR010402 GO:0005515
Tsu04g03717 597 Gene3D - 33 238 - -
Tsu04g03717 597 MobiDBLite consensus disorder prediction 178 201 - -
Tsu04g03717 597 MobiDBLite consensus disorder prediction 345 394 - -
Tsu04g03717 597 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Tsu04g03717 597 ProSiteProfiles CCT domain profile. 518 560 IPR010402 GO:0005515
Tsu04g03717 597 SUPERFAMILY CheY-like 29 158 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03717 Tsu-Chr4 46201434 46206876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03717 22 596 Response Regulator Gene Family AT5G61380 51.343 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Tsu04g03717 Response_reg 1.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03717 K12127 - gmx:100786522 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03717 04 46201434 46206876 Tsu04g03717 04 46201434 46206876 ECH