Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03712 ATGGATACTGGACGAGACGAAAGACCCTTTTTGGGTTTTCGTTTTGTCTCCAAATTTTTATTATGCGCCATTTCTGGAACTCTCACTGCATCTTTTGCCATTGCTGGGGCACTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTCTCCGTGGAGTTTCATTGGGTGCCATTGCTGGGGCTATACTCTCGGTGGAGGTCTTGGAAGCTTCTCGTGCGTATTGGTGTATGGAGCAAACCGGTGCACGTGGCGCATCATCTATGTTTGAACAGGTTGGAATTGCTAATAACACTGGTTATGATGAGATTCATGATGTTCATAGTTTAGTAACATCCAGAGGATTGTCAGGTGATTCGTTGAATAAGCTACCGCACCATATGATTTTGAAGGACATGAAGGCAGAGGATACTTTCTGCGCAATATGTTTGCAGGATATGGAAGTAGGTGAAACCGCAAGAAGCTTACCTCGTTGTGATCATACATTTCACTTGATATGCGTGGACAAGTGGCTTGTCAAGAACGATTCGTGTCCTATTTGCAGACAGAATGTGTAG 573 0.4468 MDTGRDERPFLGFRFVSKFLLCAISGTLTASFAIAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGARGASSMFEQVGIANNTGYDEIHDVHSLVTSRGLSGDSLNKLPHHMILKDMKAEDTFCAICLQDMEVGETARSLPRCDHTFHLICVDKWLVKNDSCPICRQNV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03712 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 97 189 - -
Tsu04g03712 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 7 95 - -
Tsu04g03712 190 SUPERFAMILY RING/U-box 126 190 - -
Tsu04g03712 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 190 IPR013083 -
Tsu04g03712 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 97 189 IPR044523 -
Tsu04g03712 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 7 95 IPR044523 -
Tsu04g03712 190 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Tsu04g03712 190 SMART ring_2 145 186 IPR001841 -
Tsu04g03712 190 Pfam Ring finger domain 145 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03712 Tsu-Chr4 46170237 46173339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03712 16 190 C3H Transcription Factor Family AT1G74410 50.249 1.78e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03712 - - mtr:MTR_4g108830 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03712 04 46170237 46173339 Tsu04g03712 04 46170237 46173339 ECH