Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03708 ATGGAAAACGTTGTGTTATCATCATGTAATAAGGAAGATGAAAAGATGGATTTGCCACCTGGTTTTCGATTTCATCCTACTGATGAAGAGCTTATAAGTCATTATCTTTACAAAAAAGTTCTTGATTCAAATTTCTCTGCAAGAGCTATTGGTGATGTAGACCTTAACAAATCTGAACCTTGGGATTTACCATGGAAAGCTAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGGTTGAGGACAAATAGAGCTACAGAACAAGGCTATTGGAAAGCTACTGGGAAAGATAAAGAGATTTTCAAAGGAAAATCTTTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCATAATCTTCCCAAAGCTGCAAAGAACGAGTGGGTTATATGTAGGGTGTTTCAGAAGAGTTCAGCTGGTAAAAAGACTCATATTTCGGGTATAATGAGGTTGGATTCACTTGGTAACGAATtggcttgttccgttttgccaCCCCTTACTGATACGTCACAATCCTTaggaaaaatcaaacaattgaatGATTCGGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCAAAGAAACCATGGAGGGATCTTTGATTCATTCAATAACTCAATTTACGGTGTTTCATCGAATAATCAAGATATTTTTTCAAGAATTTCATCTTCTAATGCGGCTTCATTATACTCTAATAATCAATCTTCGATTAATTTGCAATTTCCTGGTTCTTCTGTTTGTGGTATGCAAGATCAAGCAATTTTAAGAGCTTTGTATGAAAACAATGGTTTTAAGACTGAGAAACAAGTTTCACATGAAATGGATCTAACTACTGATATGTCAAATTTTGATATTGGTAGAAGGGCTTTTGAGAATAATCAGAATCGTCCACAACCTGCTTCTGTTGCAGCTGTTGATTTTGATGCTACTTTGTGGAATTACTAA 1047 0.3438 MENVVLSSCNKEDEKMDLPPGFRFHPTDEELISHYLYKKVLDSNFSARAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEQGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDSLGNELACSVLPPLTDTSQSLGKIKQLNDSAYVPCFSNSIDVQRNHGGIFDSFNNSIYGVSSNNQDIFSRISSSNAASLYSNNQSSINLQFPGSSVCGMQDQAILRALYENNGFKTEKQVSHEMDLTTDMSNFDIGRRAFENNQNRPQPASVAAVDFDATLWNY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03708 348 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Tsu04g03708 348 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 8 344 - -
Tsu04g03708 348 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
Tsu04g03708 348 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Tsu04g03708 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 344 - -
Tsu04g03708 348 SUPERFAMILY NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03708 Tsu-Chr4 46134017 46135987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03708 16 348 NAC Transcription Factor Family AT5G07680 57.988 4.10e-128 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g03708 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03708 - - cam:101502392 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03708 04 46134017 46135987 Tsu03g01632 03 16354982 16362243 ECH
Tsu04g03708 04 46134017 46135987 Tsu04g03708 04 46134017 46135987 ECH