Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03701 ATGGGGAGAGTTAAACTGAAGATAAAGAAATTGGAAAGCACAAGCAACCGACATGTGACTTATTCAAAGAGGAAAAGTGGAATCTTAAAGAAAGCAAAGGAATTATCAATTCTATGTGATATTGATATTCTCCTTCTCATGTTTTCTCCCACAGATAAACCTACCTTATTACAAGGAGAGCGCAGCAATATGGAGGAGATCATTTCAAAGTTTGCCCAACTTAGCCCACAAGAAAGGGCAAAAAGCAGGAAAATGGAAAGTCTTGAAgCACTGAAAAAGACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGTCATCAAGTGAGAGTTTTACAAGCTCAACTCGCAGAAATACAACAGAGACTGAGCTATTGGAGTAATCTAGAGAAGATCAATAACTTGGAGCATCTTAGACAAATGGAAGACTCGCTTAGGGAATCAATTAATCGACTATGTATACAAAAGgAAAATTTAAGAAAGCGACAACTAATGTCACTTGATTGTGCTAACCAGTTACCCGAAGGGATGACTTTACCTTTGATGATGGCTGGTCTACAAGAATCTCAACCCTTGTCTTGGCTTCTAAGTGGCGATAATCACCAGTTGATGTTACCTAATGAACCAAAATTTATGCCATTTAGTGATAATGGCAATAGAGATGTTGAGTGCTCCACCGACATTTCACTCCCGGGCTATTCTGGTTATATTGGGAATGGAAAACTCGAGGTTGGAAGCTCTCCTCATGTCAATACTTTGGGTCAGGGAGGTAGTTCTTTGAACGAGCTAAACGGAAATCCAAATCCTTACTTAAATGTACAACAGTGTGATCAATTTGCATACCCTCCTCCTCCGCAAGATCTCGAGGAAGTGAAACATAACCAAACAATGAATAATAGTAAATCCAATACTATGGATTACCAAGTTAATAACAACTATGAACTTCCAAGATcattatttgaaaatgaacatCAGCAGTTCTGGAATTCTACTAATGGCTCTTGTGGGATTGCTATGTATAATGAGAATGGTTACCATAGGTAA 1059 0.3739 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTDKPTLLQGERSNMEEIISKFAQLSPQERAKSRKMESLEALKKTFKKLDHDVKIQDFLGSSHQVRVLQAQLAEIQQRLSYWSNLEKINNLEHLRQMEDSLRESINRLCIQKENLRKRQLMSLDCANQLPEGMTLPLMMAGLQESQPLSWLLSGDNHQLMLPNEPKFMPFSDNGNRDVECSTDISLPGYSGYIGNGKLEVGSSPHVNTLGQGGSSLNELNGNPNPYLNVQQCDQFAYPPPPQDLEEVKHNQTMNNSKSNTMDYQVNNNYELPRSLFENEHQQFWNSTNGSCGIAMYNENGYHR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03701 352 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu04g03701 352 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Tsu04g03701 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Tsu04g03701 352 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Tsu04g03701 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 351 - -
Tsu04g03701 352 Coils Coil 147 167 - -
Tsu04g03701 352 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g03701 352 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Tsu04g03701 352 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g03701 352 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu04g03701 352 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g03701 352 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03701 Tsu-Chr4 46071968 46075004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03701 1 269 Type I MADS-box Gene Family AT2G03060 49.301 1.78e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g03701 SRF-TF 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03701 - - pvu:PHAVU_003G189100g 556.599