Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03694 ATGGTGAGACCACCATGTTGTGAGAAATTAGGGATTAAGAAAGGACCTTGGACTCCTGAGGAAGATATCATCTTAGTTTCTTACATTCAACAACATGGACCTGGAAATTGGAGATCAGTTCCTACGAATACCGGTTTGATGAGATGTAGTAAGAGTTGTAGACTTAGATGGACAAACTATCTTCGACCCGGCATCAAACGAGGTAACTTCACAGATCATGAAGAGAAAATGATTGTTCATCTTCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCATCATATCTTCCTCAAAGGACAGacaatgatataaaaaattattggaaTACTCATTTAAAGAGAAAGATGAGCAAAGATCAAAGTTCTGATGAAACTGGTGTTGATCAAGAAGCTCGTTCGCAGCCGCCAAATAAAGGACAATGGGAGAGAAGACTACAAACAGATATTCATATGGCCAAACAAGCCTTATCTGAGGCTTTATCCCTTCAACAAAGCCCAACCAAATCTGAGATGAAACCCTCATCAAGTTCTTCTCATTCTCATGAACATCTACCAAATCTTCATATTCCATCTCCATATGCATCAAGCTATGAAAATATTGCTAGATTGATGGAAAATTGGATGAAATCACCTAACTCAGCTGAAACAAATTCCTCATCAATATTCAGCAACATGGTTACCACTGCAGGATCAAGTTGTAGTGAAGGAGCACAAAGCACAACACAAGATCATCATGCTTTTGACTCTAAGATGTTCACCTCCAAATCTGAATATTATGCCTCTAGATTTAGGGCAACTCATGAAGGGAACAATAACTTGATGACTACAAAAGAGAGTCTCTTTCAAGATGAAATGATTAATATTAAAGGAAAGATGGATACAAATGTCCCTTTAACTTTGTTGGAAAAATGGCTTTTTGAAGATGGAGGAGCAACTCATGAATGTCATGAAGATCTTATAAACATGTCATTGGGAGATCAAAGTACTTCAGATATGTTTTAG 1002 0.3723 MVRPPCCEKLGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKRKMSKDQSSDETGVDQEARSQPPNKGQWERRLQTDIHMAKQALSEALSLQQSPTKSEMKPSSSSSHSHEHLPNLHIPSPYASSYENIARLMENWMKSPNSAETNSSSIFSNMVTTAGSSCSEGAQSTTQDHHAFDSKMFTSKSEYYASRFRATHEGNNNLMTTKESLFQDEMINIKGKMDTNVPLTLLEKWLFEDGGATHECHEDLINMSLGDQSTSDMF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03694 333 MobiDBLite consensus disorder prediction 114 141 - -
Tsu04g03694 333 MobiDBLite consensus disorder prediction 159 184 - -
Tsu04g03694 333 CDD SANT 69 112 IPR001005 -
Tsu04g03694 333 Gene3D - 13 66 - -
Tsu04g03694 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tsu04g03694 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu04g03694 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu04g03694 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g03694 333 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 320 - -
Tsu04g03694 333 CDD SANT 16 61 IPR001005 -
Tsu04g03694 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu04g03694 333 MobiDBLite consensus disorder prediction 159 190 - -
Tsu04g03694 333 MobiDBLite consensus disorder prediction 127 141 - -
Tsu04g03694 333 SMART sant 13 63 IPR001005 -
Tsu04g03694 333 SMART sant 66 114 IPR001005 -
Tsu04g03694 333 Gene3D - 69 146 - -
Tsu04g03694 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tsu04g03694 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Tsu04g03694 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03694 Tsu-Chr4 46001264 46003019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03694 1 327 MYB Transcription Factor Family AT5G62470 49.731 4.65e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g03694 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03694 K09422 - gmx:100799402 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03694 04 46001264 46003019 Tsu04g03694 04 46001264 46003019 ECH