Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03686 ATGTTACCAATTACCATTTCATGGTCTAATATATTTCCCTTTCATGTGCATAATGATGGAAATCTCGAACAGTTTGCAATATACCATCAACAAGATCAGAAAATGGATATTCCTAACTTTGATCTTCCATCCAAAATTTTATGCGTTGTTATTGGTGTTCAGTTACAGGTACATGATAACACAGATGAGGTTTTCGCTCTTATTACCTTAATTCCGTTGAAGCAACAAGAGTTTATGGTAGAGAACCAAGATCCACTCGATGATAGTCCTAGTGAAATCTATTCCTTCACTAGGATACTCAATTCAACTGAAACAAGTAGACATGCTGCTGGACTTTATATTCCTAACCAACATGCAGATAGATGCTTGGCGATGGATATGGCTGTTCAACCACCAATGCAAAATCTAGTGGCAAAGGACTTGCATGGAATTGAGTGGAATTTCCGACACATTTACTGTGGAACTATGTTCCATGTCCAGTACCACCCTTGGATTACTCCCTTTGAGTTTATGATCCCTCTGAAAACTTATGCCGAGTCTATTGAAAGAGACTATTTCATTGGAATGAGGGTACGTATGTTGCTGGAAGTCGAAGGATCTTCAAGAAGATATGGTACAATTGTTGGCAATGAAGATATTGATCCCATTAGGTGGCCGAGATCTGAATGGAGATGTATCAAGGTGCAATGGGATTCCACACCAAATACTACTACACAACTAGCGTTTGTCCTTGGTGGATCGAGCCTTTGGGATCTCCCAAGATTAAGGGCTTTCCTATTCCCCCTTTATCAAATGAGATTATTGGGAGTTCGTCCACGTCTGAAGATCACATTGTTGATATGA 843 0.3962 MLPITISWSNIFPFHVHNDGNLEQFAIYHQQDQKMDIPNFDLPSKILCVVIGVQLQVHDNTDEVFALITLIPLKQQEFMVENQDPLDDSPSEIYSFTRILNSTETSRHAAGLYIPNQHADRCLAMDMAVQPPMQNLVAKDLHGIEWNFRHIYCGTMFHVQYHPWITPFEFMIPLKTYAESIERDYFIGMRVRMLLEVEGSSRRYGTIVGNEDIDPIRWPRSEWRCIKVQWDSTPNTTTQLAFVLGGSSLWDLPRLRAFLFPLYQMRLLGVRPRLKITLLI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03686 280 PANTHER AUXIN RESPONSE FACTOR 19 154 - -
Tsu04g03686 280 Gene3D - 93 168 IPR015300 -
Tsu04g03686 280 PANTHER AUXIN RESPONSE FACTOR 154 237 - -
Tsu04g03686 280 Gene3D - 185 252 - -
Tsu04g03686 280 SUPERFAMILY DNA-binding pseudobarrel domain 89 168 IPR015300 -
Tsu04g03686 280 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 154 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu04g03686 280 Pfam Auxin response factor 151 227 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu04g03686 280 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 154 237 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03686 Tsu-Chr4 45904901 45908157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03686 151 233 B3 DNA Binding Superfamily AT5G62000 50.588 6.67e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03686 - - mtr:MTR_8g446900 154.451